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[bug#39588] gnu: Add mpich, scalapack-mpich, mumps-mpich, pt-scotch-mpic
From: |
Maurice Brémond |
Subject: |
[bug#39588] gnu: Add mpich, scalapack-mpich, mumps-mpich, pt-scotch-mpich, python-mpi4py-mpich |
Date: |
Tue, 18 Feb 2020 18:58:11 +0100 |
User-agent: |
Gnus/5.13 (Gnus v5.13) Emacs/26.1.50 (gnu/linux) |
Hi Ludovic & Simon!
I agree, the *-mpich packages are not necessary and this asks the
question of why those variants and why not others. Finally, I could keep
them on my own channel for convenience.
If I understand, in this case, the usage of --with-input is
possible because implicit packages are very likely to not use mpi ?
In guix packages, mpi input is usually declared as
(("openmpi" . ,openmpi))
or
(("mpi" . ,openmpi))
So two flags are necessary for the transformation.
Doing this, I ran into problems with your patch...
You can try with my original patch just a transformation of
mumps-openmpi into mumps-mpich:
guix time-machine --url=https://gitlab.inria.fr/bremond/guix.git \
--branch=add-mpich -- \
environment -K --pure --ad-hoc mumps-openmpi \
--with-input=mpi=mpich --with-input=openmpi=mpich --
This works for me, I can use a similar command to compile and execute a
program which uses mumps and I can see with ldd that mpich is used.
Then with the current mpich patch on savannah master:
guix time-machine --commit=c70261bfb993cebc23cd80042de3f52a8b7932a4 -- \
environment -K --pure --ad-hoc mumps-openmpi \
--with-input=mpi=mpich --with-input=openmpi=mpich --
This fails on my machine for the pt-scotch check (there is the same
error with scalapack check)
Invalid error code (-2) (error ring index 127 invalid)
INTERNAL ERROR: invalid error code fffffffe (Ring Index out of range) in
MPID_nem_tcp_init:373
Fatal error in PMPI_Init: Other MPI error, error stack:
MPIR_Init_thread(586)..............:
MPID_Init(224).....................: channel initialization failed
MPIDI_CH3_Init(105)................:
MPID_nem_init(324).................:
MPID_nem_tcp_init(175).............:
MPID_nem_tcp_get_business_card(401):
MPID_nem_tcp_init(373).............: gethostbyname failed, localhost (errno 0)
If I go into the build directory and launch the check manually after
sourcing the environment-variables file, it works...
So it seems that this is related to guix and the guixbuild environment in
the definition of the package.
Maurice
- [bug#39588] gnu: Add mpich, scalapack-mpich, mumps-mpich, pt-scotch-mpich, python-mpi4py-mpich, Maurice Brémond, 2020/02/13
- [bug#39588] gnu: Add mpich, scalapack-mpich, mumps-mpich, pt-scotch-mpich, python-mpi4py-mpich, Ludovic Courtès, 2020/02/17
- [bug#39588] gnu: Add mpich, scalapack-mpich, mumps-mpich, pt-scotch-mpich, python-mpi4py-mpich, zimoun, 2020/02/17
- [bug#39588] gnu: Add mpich, scalapack-mpich, mumps-mpich, pt-scotch-mpich, python-mpi4py-mpich, Ludovic Courtès, 2020/02/20
- [bug#39588] gnu: Add mpich, scalapack-mpich, mumps-mpich, pt-scotch-mpich, python-mpi4py-mpich, zimoun, 2020/02/20
- [bug#39588] gnu: Add mpich, scalapack-mpich, mumps-mpich, pt-scotch-mpich, python-mpi4py-mpich, Ludovic Courtès, 2020/02/21
- [bug#39588] gnu: Add mpich, scalapack-mpich, mumps-mpich, pt-scotch-mpich, python-mpi4py-mpich, zimoun, 2020/02/21
- [bug#39588] gnu: Add mpich, scalapack-mpich, mumps-mpich, pt-scotch-mpich, python-mpi4py-mpich, zimoun, 2020/02/25
[bug#39588] gnu: Add mpich, scalapack-mpich, mumps-mpich, pt-scotch-mpich, python-mpi4py-mpich,
Maurice Brémond <=
- [bug#39588] gnu: Add mpich, scalapack-mpich, mumps-mpich, pt-scotch-mpich, python-mpi4py-mpich, zimoun, 2020/02/18
- [bug#39588] gnu: Add mpich, scalapack-mpich, mumps-mpich, pt-scotch-mpich, python-mpi4py-mpich, Maurice Brémond, 2020/02/19
- [bug#39588] gnu: Add mpich, scalapack-mpich, mumps-mpich, pt-scotch-mpich, python-mpi4py-mpich, zimoun, 2020/02/19
[bug#39588] gnu: Add mpich, scalapack-mpich, mumps-mpich, pt-scotch-mpich, python-mpi4py-mpich, zimoun, 2020/02/19
[bug#39588] gnu: Add mpich, scalapack-mpich, mumps-mpich, pt-scotch-mpich, python-mpi4py-mpich, Maurice Brémond, 2020/02/21
[bug#39588] gnu: Add mpich, scalapack-mpich, mumps-mpich, pt-scotch-mpich, python-mpi4py-mpich, Ludovic Courtès, 2020/02/20
[bug#39588] gnu: Add mpich, scalapack-mpich, mumps-mpich, pt-scotch-mpich, python-mpi4py-mpich, Maurice Brémond, 2020/02/21
[bug#39588] gnu: Add mpich, scalapack-mpich, mumps-mpich, pt-scotch-mpich, python-mpi4py-mpich, Ludovic Courtès, 2020/02/21
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