>From c50fc3ec734cb94e78168a4a29c9aff070f4ae9f Mon Sep 17 00:00:00 2001
From: Lars-Dominik Braun <address@hidden>
Date: Fri, 7 Feb 2020 08:41:24 +0100
Subject: [PATCH 4/5] gnu: Add package python-jupyterlab

* gnu/packages/python-xyz.scm (python-jupyterlab): New variable.
---
 .../python-jupyterlab-copy-nometa.patch       | 33 +++++++++++
 gnu/packages/python-xyz.scm                   | 55 +++++++++++++++++++
 2 files changed, 88 insertions(+)
 create mode 100644 gnu/packages/patches/python-jupyterlab-copy-nometa.patch

diff --git a/gnu/packages/patches/python-jupyterlab-copy-nometa.patch b/gnu/packages/patches/python-jupyterlab-copy-nometa.patch
new file mode 100644
index 0000000000..5e770c0f47
--- /dev/null
+++ b/gnu/packages/patches/python-jupyterlab-copy-nometa.patch
@@ -0,0 +1,33 @@
+diff '--exclude=*.swp' -Naur jupyterlab-1.2.6.orig/jupyterlab/commands.py jupyterlab-1.2.6/jupyterlab/commands.py
+--- jupyterlab-1.2.6.orig/jupyterlab/commands.py	2020-01-24 17:25:16.238353500 +0100
++++ jupyterlab-1.2.6/jupyterlab/commands.py	2020-01-31 12:36:10.497375982 +0100
+@@ -1100,7 +1100,7 @@
+                       'webpack.prod.minimize.config.js',
+                       '.yarnrc', 'yarn.js']:
+             target = pjoin(staging, fname)
+-            shutil.copy(pjoin(HERE, 'staging', fname), target)
++            shutil.copyfile(pjoin(HERE, 'staging', fname), target)
+ 
+         # Ensure a clean templates directory
+         templates = pjoin(staging, 'templates')
+@@ -1108,7 +1108,10 @@
+             _rmtree(templates, self.logger)
+ 
+         try:
+-            shutil.copytree(pjoin(HERE, 'staging', 'templates'), templates)
++            shutil.copytree(pjoin(HERE, 'staging', 'templates'), templates,
++                    copy_function=shutil.copyfile)
++            # cannot replace or disable copytree’s call to .copystat
++            os.chmod (templates, 0o755)
+         except shutil.Error as error:
+             # `copytree` throws an error if copying to + from NFS even though
+             # the copy is successful (see https://bugs.python.org/issue24564
+@@ -1178,7 +1181,7 @@
+             with open(lock_path, 'w', encoding='utf-8') as f:
+                 f.write(template)
+         elif not osp.exists(lock_path):
+-            shutil.copy(lock_template, lock_path)
++            shutil.copyfile(lock_template, lock_path)
+ 
+     def _get_package_template(self, silent=False):
+         """Get the template the for staging package.json file.
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 92ee53fe6f..232841ccb1 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -126,6 +126,7 @@
   #:use-module (gnu packages multiprecision)
   #:use-module (gnu packages networking)
   #:use-module (gnu packages ncurses)
+  #:use-module (gnu packages node)
   #:use-module (gnu packages openstack)
   #:use-module (gnu packages pcre)
   #:use-module (gnu packages perl)
@@ -17656,3 +17657,57 @@ dumping of JSON5 data structures.")
     (description "A set of server components for JupyterLab and JupyterLab like
 applications")
     (license license:bsd-3)))
+
+(define-public python-jupyterlab
+  (package
+    (name "python-jupyterlab")
+    (version "1.2.6")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (pypi-uri "jupyterlab" version))
+        (sha256
+          (base32
+            "0mc3nrj7fc5q2ajr09m261j386jsp8qjljg8anghlh8czc9ln4s2"))
+        (patches (search-patches "python-jupyterlab-copy-nometa.patch"))))
+    (build-system python-build-system)
+    (propagated-inputs
+      `(("python-jinja2" ,python-jinja2)
+        ("python-jupyterlab-server"
+         ,python-jupyterlab-server)
+        ("python-notebook" ,python-notebook)
+        ("python-tornado" ,python-tornado)
+		("node" ,node)))
+    (native-inputs
+      `(("python-pytest" ,python-pytest)
+        ("python-pytest-check-links"
+         ,python-pytest-check-links)
+        ("python-requests" ,python-requests)
+        ("python-ipykernel" ,python-ipykernel)))
+    (arguments
+     ;; testing requires npm, so disabled for now
+     '(#:tests? #f
+       #:phases
+       (modify-phases %standard-phases
+         (add-after 'unpack 'patch-syspath
+           (lambda* (#:key outputs inputs configure-flags #:allow-other-keys)
+             (let* ((out (assoc-ref outputs "out")))
+               (substitute* "jupyterlab/commands.py"
+                 ;; sys.prefix defaults to Python’s prefix in the store, not
+                 ;; jupyterlab’s. Fix that.
+                 (("sys\\.prefix")
+                  (string-append "'" out "'"))))
+             #t))
+         ;; 'build does not respect configure-flags
+         (replace 'build
+           (lambda _
+             (invoke "python" "setup.py" "build" "--skip-npm"))))
+      #:configure-flags (list "--skip-npm")))
+    (home-page "https://jupyter.org")
+    (synopsis
+      "The JupyterLab notebook server extension")
+    (description
+	  "An extensible environment for interactive and reproducible computing,
+based on the Jupyter Notebook and Architecture.")
+    (license license:bsd-3)))
+
-- 
2.20.1