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[bug#33032] Update
From: |
Andreas Enge |
Subject: |
[bug#33032] Update |
Date: |
Sat, 5 Sep 2020 22:36:39 +0200 |
Hello,
I just updated seqmagick to 0.8.0.
Then I tried to update python-biopython to the latest version, 1.78. With it,
seqmagick fails to compile with the following message:
mportError: cannot import name 'triefind' from 'Bio'
(/gnu/store/9cr6885z39yb5x3pbanva5h9nacmlkvz-python-biopython-1.78/lib/python3.8/site-packages/Bio/__init__.py)
======================================================================
ERROR: Failure: ImportError (Bio.Alphabet has been removed from Biopython. In
many cases, the alphabet can simply be ignored and removed from scripts. In a
few cases, you may need to specify the ``molecule_type`` as an annotation on a
SeqRecord for your script to work correctly. Please see
https://biopython.org/wiki/Alphabet for more information.)
Andreas
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Andreas Enge <=