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[bug#43345] [PATCH 06/12] gnu: r-qtl2: Move to (gnu packages cran).
From: |
zimoun |
Subject: |
[bug#43345] [PATCH 06/12] gnu: r-qtl2: Move to (gnu packages cran). |
Date: |
Fri, 11 Sep 2020 20:08:43 +0200 |
* gnu/packages/bioinformatics.scm (r-qtl2): Move from here ...
* gnu/packages/cran.scm (r-qtl2): ... to here.
---
gnu/packages/bioinformatics.scm | 26 --------------------------
gnu/packages/cran.scm | 27 +++++++++++++++++++++++++++
2 files changed, 27 insertions(+), 26 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index ae728f09dc..4de52f3aaa 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8510,32 +8510,6 @@ Stephens (1990).")
throughput genetic sequencing data sets using regression methods.")
(license license:artistic2.0)))
-(define-public r-qtl2
- (package
- (name "r-qtl2")
- (version "0.22-11")
- (source (origin
- (method url-fetch)
- (uri (cran-uri "qtl2" version))
- (sha256
- (base32
"0dfdzjylqzc92dcszawc8cyinxccjm3p36v9vcq9ma818pqcanmr"))))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-data-table" ,r-data-table)
- ("r-jsonlite" ,r-jsonlite)
- ("r-rcpp" ,r-rcpp)
- ("r-rcppeigen" ,r-rcppeigen)
- ("r-rsqlite" ,r-rsqlite)
- ("r-yaml" ,r-yaml)))
- (home-page "https://kbroman.org/qtl2/")
- (synopsis "Quantitative Trait Locus Mapping in Experimental Crosses")
- (description
- "This package provides a set of tools to perform @dfn{Quantitative Trait
-Locus} (QTL) analysis in experimental crosses. It is a reimplementation of the
-@code{R/qtl} package to better handle high-dimensional data and complex cross
-designs. Broman et al. (2018) <doi:10.1534/genetics.118.301595>.")
- (license license:gpl3)))
-
(define-public r-zlibbioc
(package
(name "r-zlibbioc")
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 868f660e41..bd36e1bacb 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -19,6 +19,7 @@
;;; Copyright © 2019 Nicolò Balzarotti <anothersms@gmail.com>
;;; Copyright © 2019 Wiktor Żelazny <wzelazny@vurv.cz>
;;; Copyright © 2019 Arne Babenhauserheide <arne_bab@web.de>
+;;; Copyright © 2019, 2020 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2020 Todor Kondić <tk.code@protonmail.com>
;;; Copyright © 2020 Danjela Lura <danielaluraa@gmail.com>
;;; Copyright © 2020 Naga Malleswari <nagamalli@riseup.net>
@@ -23727,3 +23728,29 @@ Using a hidden Markov model, R/qtl estimates genetic
maps, to
identify genotyping errors, and to perform single-QTL and two-QTL,
two-dimensional genome scans.")
(license license:gpl3)))
+
+(define-public r-qtl2
+ (package
+ (name "r-qtl2")
+ (version "0.22-11")
+ (source (origin
+ (method url-fetch)
+ (uri (cran-uri "qtl2" version))
+ (sha256
+ (base32
"0dfdzjylqzc92dcszawc8cyinxccjm3p36v9vcq9ma818pqcanmr"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-data-table" ,r-data-table)
+ ("r-jsonlite" ,r-jsonlite)
+ ("r-rcpp" ,r-rcpp)
+ ("r-rcppeigen" ,r-rcppeigen)
+ ("r-rsqlite" ,r-rsqlite)
+ ("r-yaml" ,r-yaml)))
+ (home-page "https://kbroman.org/qtl2/")
+ (synopsis "Quantitative Trait Locus Mapping in Experimental Crosses")
+ (description
+ "This package provides a set of tools to perform @dfn{Quantitative Trait
+Locus} (QTL) analysis in experimental crosses. It is a reimplementation of the
+@code{R/qtl} package to better handle high-dimensional data and complex cross
+designs. Broman et al. (2018) <doi:10.1534/genetics.118.301595>.")
+ (license license:gpl3)))
--
2.28.0
- [bug#43345] [PATCH 00/12] Move some CRAN packages to (gnu packages cran)., zimoun, 2020/09/11
- [bug#43345] [PATCH 01/12] gnu: r-codedepends: Comment why is in bioconductor.scm., zimoun, 2020/09/11
- [bug#43345] [PATCH 03/12] gnu: r-diffusionmap: Move to (gnu packages cran)., zimoun, 2020/09/11
- [bug#43345] [PATCH 04/12] gnu: r-igraph: Move to (gnu packages cran)., zimoun, 2020/09/11
- [bug#43345] [PATCH 02/12] gnu: r-adaptivesparsity: Move to (gnu packages cran)., zimoun, 2020/09/11
- [bug#43345] [PATCH 05/12] gnu: r-qtl: Move to (gnu packages cran)., zimoun, 2020/09/11
- [bug#43345] [PATCH 06/12] gnu: r-qtl2: Move to (gnu packages cran).,
zimoun <=
- [bug#43345] [PATCH 09/12] gnu: r-seurat: Move to (gnu packages cran)., zimoun, 2020/09/11
- [bug#43345] [PATCH 07/12] gnu: r-seqminer: Move to (gnu packages cran)., zimoun, 2020/09/11
- [bug#43345] [PATCH 12/12] gnu: r-absfiltergsea: Move to (gnu packages cran)., zimoun, 2020/09/11
- [bug#43345] [PATCH 10/12] gnu: r-phangorn: Move to (gnu packages cran)., zimoun, 2020/09/11
- [bug#43345] [PATCH 11/12] gnu: r-diversitree: Move to (gnu packages cran)., zimoun, 2020/09/11
- [bug#43345] [PATCH 08/12] gnu: r-maldiquant: Move to (gnu packages cran)., zimoun, 2020/09/11
- bug#43345: [PATCH 00/12] Move some CRAN packages to (gnu packages cran)., Ricardo Wurmus, 2020/09/11