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[bug#45282] [PATCH 1/2] gnu: Add r-kegggraph.
From: |
Mădălin Ionel Patrașcu |
Subject: |
[bug#45282] [PATCH 1/2] gnu: Add r-kegggraph. |
Date: |
Wed, 16 Dec 2020 23:03:41 +0100 |
* gnu/packages/bioconductor.scm (r-kegggraph): New variable.
---
gnu/packages/bioconductor.scm | 26 ++++++++++++++++++++++++++
1 file changed, 26 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index b4a1af4306..3026d1a496 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -9247,3 +9247,29 @@ graph with the mapped data. In addition,
@code{r-pathview} also seamlessly
integrates with pathway and gene set (enrichment) analysis tools for
large-scale and fully automated analysis.")
(license license:gpl3+)))
+
+(define-public r-kegggraph
+ (package
+ (name "r-kegggraph")
+ (version "1.50.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "KEGGgraph" version))
+ (sha256
+ (base32 "1h293hn02ysm923bh9gxk87xv663xiqchqcvpaxpla9c3yrgkx2v"))))
+ (properties `((upstream-name . "KEGGgraph")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-graph" ,r-graph)
+ ("r-rcurl" ,r-rcurl)
+ ("r-xml" ,r-xml)))
+ (home-page "http://www.nextbiomotif.com") ;;no https
+ (synopsis "Graph approach to Kegg Pathway database in R and Bioconductor")
+ (description
+ "@code{r-kegggraph} is an interface between Kegg Pathway database and
graph
+object as well as a collection of tools to analyze, dissect and visualize these
+graphs. It parses the regularly updated kgml (Kegg xml) files into graph
models
+maintaining all essential pathway attributes. The package offers
+functionalities including parsing, graph operation, visualization and etc.")
+ (license license:gpl2+)))
--
2.29.2