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[bug#47156] [PATCH 03/10] gnu: r-biocstyle: Move to (gnu packages biocon
From: |
zimoun |
Subject: |
[bug#47156] [PATCH 03/10] gnu: r-biocstyle: Move to (gnu packages bioconductor). |
Date: |
Mon, 15 Mar 2021 14:01:28 +0100 |
* gnu/packages/bioinformatics.scm (r-biocstyle): Move from here...
* gnu/packages/bioconductor.scm (r-biocstyle): ...to here.
---
gnu/packages/bioconductor.scm | 28 ++++++++++++++++++++++++++++
gnu/packages/bioinformatics.scm | 28 ----------------------------
2 files changed, 28 insertions(+), 28 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 4761474b04..91d02639a3 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -8477,6 +8477,34 @@ monograph.")
different graph related packages produced by Bioconductor.")
(license license:artistic2.0)))
+(define-public r-biocstyle
+ (package
+ (name "r-biocstyle")
+ (version "2.18.1")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "BiocStyle" version))
+ (sha256
+ (base32
+ "0rsxyna4dd99x42vc82mlkxx774vb9375llpakg53max1hhwkrqp"))))
+ (properties
+ `((upstream-name . "BiocStyle")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biocmanager" ,r-biocmanager)
+ ("r-bookdown" ,r-bookdown)
+ ("r-knitr" ,r-knitr)
+ ("r-rmarkdown" ,r-rmarkdown)
+ ("r-yaml" ,r-yaml)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
+ (home-page "https://bioconductor.org/packages/BiocStyle")
+ (synopsis "Bioconductor formatting styles")
+ (description "This package provides standard formatting styles for
+Bioconductor PDF and HTML documents. Package vignettes illustrate use and
+functionality.")
+ (license license:artistic2.0)))
+
(define-public r-biocviews
(package
(name "r-biocviews")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index cc6e40283b..ad3ae204e1 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -7691,34 +7691,6 @@ including VCF header and contents in RDF and JSON.")
(home-page "https://github.com/vcflib/bio-vcf")
(license license:expat)))
-(define-public r-biocstyle
- (package
- (name "r-biocstyle")
- (version "2.18.1")
- (source (origin
- (method url-fetch)
- (uri (bioconductor-uri "BiocStyle" version))
- (sha256
- (base32
- "0rsxyna4dd99x42vc82mlkxx774vb9375llpakg53max1hhwkrqp"))))
- (properties
- `((upstream-name . "BiocStyle")))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-biocmanager" ,r-biocmanager)
- ("r-bookdown" ,r-bookdown)
- ("r-knitr" ,r-knitr)
- ("r-rmarkdown" ,r-rmarkdown)
- ("r-yaml" ,r-yaml)))
- (native-inputs
- `(("r-knitr" ,r-knitr)))
- (home-page "https://bioconductor.org/packages/BiocStyle")
- (synopsis "Bioconductor formatting styles")
- (description "This package provides standard formatting styles for
-Bioconductor PDF and HTML documents. Package vignettes illustrate use and
-functionality.")
- (license license:artistic2.0)))
-
(define-public r-bioccheck
(package
(name "r-bioccheck")
--
2.30.1
- [bug#47156] [PATCH 00/10] Move some Bioconductor packages to (gnu packages bioconductor)., zimoun, 2021/03/15
- [bug#47156] [PATCH 01/10] gnu: r-grohmm: Move to (gnu packages bioconductor)., zimoun, 2021/03/15
- [bug#47156] [PATCH 02/10] gnu: r-biocviews: Move to (gnu packages bioconductor)., zimoun, 2021/03/15
- [bug#47156] [PATCH 05/10] gnu: r-s4vectors: Move to (gnu packages bioconductor)., zimoun, 2021/03/15
- [bug#47156] [PATCH 03/10] gnu: r-biocstyle: Move to (gnu packages bioconductor).,
zimoun <=
- [bug#47156] [PATCH 06/10] gnu: r-iranges: Move to (gnu packages bioconductor)., zimoun, 2021/03/15
- [bug#47156] [PATCH 04/10] gnu: r-bioccheck: Move to (gnu packages bioconductor)., zimoun, 2021/03/15
- [bug#47156] [PATCH 08/10] gnu: r-genomeinfodb: Move to (gnu packages bioconductor)., zimoun, 2021/03/15
- [bug#47156] [PATCH 07/10] gnu: r-genomeinfodbdata: Move to (gnu packages bioconductor)., zimoun, 2021/03/15
- [bug#47156] [PATCH 09/10] gnu: r-edger: Move to (gnu packages bioconductor)., zimoun, 2021/03/15
- [bug#47156] [PATCH 10/10] gnu: r-variantannotation: Move to (gnu packages bioconductor)., zimoun, 2021/03/15
- bug#47156: [PATCH 00/10] Move some Bioconductor packages to (gnu packages bioconductor)., Ricardo Wurmus, 2021/03/15