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[bug#49167] [PATCH core-updates] gnu: jemalloc: --disable-initial-exec-t
From: |
Ryan Sundberg |
Subject: |
[bug#49167] [PATCH core-updates] gnu: jemalloc: --disable-initial-exec-tls |
Date: |
Mon, 21 Jun 2021 22:52:22 -0700 |
Sorry, I missed a spot rebasing this last patch. Please use the attached
patch which builds.
--
Sincerely,
Ryan Sundberg
On 6/21/21 10:44 PM, Ryan Sundberg wrote:
> Disable the thread local storage model in jemalloc 5 to prevent
> shared libraries linked to libjemalloc from crashing on dlopen().
> https://github.com/jemalloc/jemalloc/issues/937
>
> This bug affects both Java JNI and python libraries which link to
> jemalloc 5, such as RocksDB, which will crash the program when loaded.
>
> * gnu/packages/jemalloc.scm (jemalloc)[arguments]: Add
> --disable-initial-exec-tls
> configure flag.
> ---
> gnu/packages/jemalloc.scm | 26 +++++++++++++++++---------
> 1 file changed, 17 insertions(+), 9 deletions(-)
>
> diff --git a/gnu/packages/jemalloc.scm b/gnu/packages/jemalloc.scm
> index c4b87b540d..67a1ca8e14 100644
> --- a/gnu/packages/jemalloc.scm
> +++ b/gnu/packages/jemalloc.scm
> @@ -2,6 +2,7 @@
> ;;; Copyright © 2015 Sou Bunnbu <iyzsong@gmail.com>
> ;;; Copyright © 2017 Efraim Flashner <efraim@flashner.co.il>
> ;;; Copyright © 2017 Eric Bavier <bavier@member.fsf.org>
> +;;; Copyright © 2021 Ryan Sundberg <ryan@arctype.co>
> ;;;
> ;;; This file is part of GNU Guix.
> ;;;
> @@ -29,10 +30,10 @@
> #:use-module (gnu packages perl)
> #:use-module (guix build-system gnu))
>
> -(define-public jemalloc
> +(define jemalloc-4.5.0
> (package
> (name "jemalloc")
> - (version "5.2.1")
> + (version "4.5.0")
> (source (origin
> (method url-fetch)
> (uri (string-append
> @@ -40,7 +41,7 @@
> version "/jemalloc-" version ".tar.bz2"))
> (sha256
> (base32
> - "1xl7z0vwbn5iycg7amka9jd6hxd8nmfk7nahi4p9w2bnw9f0wcrl"))))
> + "10373xhpc10pgmai9fkc1z0rs029qlcb3c0qfnvkbwdlcibdh2cl"))))
> (build-system gnu-build-system)
> (arguments
> `(#:phases
> @@ -58,7 +59,7 @@
> ;; Transparent huge pages are only enabled by default on Intel
> processors
> '()
> '(#:configure-flags (list "--disable-thp")))))
> - (inputs `(("perl" ,perl)))
> + (inputs '())
> ;; Install the scripts to a separate output to avoid referencing Perl and
> ;; Bash in the default output, saving ~75 MiB on the closure.
> (outputs '("out" "bin"))
> @@ -69,10 +70,10 @@
> fragmentation avoidance and scalable concurrency support.")
> (license bsd-2)))
>
> -(define-public jemalloc-4.5.0
> +(define-public jemalloc
> (package
> - (inherit jemalloc)
> - (version "4.5.0")
> + (inherit jemalloc-4.5.0)
> + (version "5.2.1")
> (source (origin
> (method url-fetch)
> (uri (string-append
> @@ -80,5 +81,12 @@ fragmentation avoidance and scalable concurrency support.")
> version "/jemalloc-" version ".tar.bz2"))
> (sha256
> (base32
> - "10373xhpc10pgmai9fkc1z0rs029qlcb3c0qfnvkbwdlcibdh2cl"))))
> - (inputs '())))
> + "1xl7z0vwbn5iycg7amka9jd6hxd8nmfk7nahi4p9w2bnw9f0wcrl"))))
> + (arguments
> + (substitute-keyword-arguments (package-arguments jemalloc-base)
> + ;; Disable the thread local storage model in jemalloc 5 to prevent
> + ;; shared libraries linked to libjemalloc from crashing on dlopen()
> + ;; https://github.com/jemalloc/jemalloc/issues/937
> + ((#:configure-flags base-configure-flags '())
> + `(cons "--disable-initial-exec-tls" ,base-configure-flags))))
> + (inputs `(("perl" ,perl)))))
>
0001-gnu-jemalloc-disable-initial-exec-tls.patch
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