[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]
[bug#54991] [PATCH 3/3] gnu: Add r-adductomicsr.
From: |
Mădălin Ionel Patrașcu |
Subject: |
[bug#54991] [PATCH 3/3] gnu: Add r-adductomicsr. |
Date: |
Sun, 17 Apr 2022 17:10:46 +0200 |
* gnu/packages/bioconductor.scm (r-adductomicsr): New variable.
---
gnu/packages/bioconductor.scm | 44 +++++++++++++++++++++++++++++++++++
1 file changed, 44 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 6e4ed31154..2cd4c89aa9 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1605,6 +1605,50 @@ (define-public r-absseq
ranking by fold-change and visualization.")
(license license:gpl3+)))
+(define-public r-adductomicsr
+ (package
+ (name "r-adductomicsr")
+ (version "1.10.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "adductomicsR" version))
+ (sha256
+ (base32
+ "0cnvxrk0h3r6jpa4g4qismg6zk5c7rf8lqixg89c24i98gffkbcl"))))
+ (properties `((upstream-name . "adductomicsR")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-adductdata
+ r-ade4
+ r-annotationhub
+ r-bootstrap
+ r-data-table
+ r-dosnow
+ r-dplyr
+ r-dt
+ r-experimenthub
+ r-fastcluster
+ r-foreach
+ r-fpc
+ r-mzr
+ r-orgmassspecr
+ r-pastecs
+ r-pracma
+ r-rcppeigen
+ r-reshape2
+ r-rvest
+ r-smoother
+ r-zoo))
+ (native-inputs (list r-knitr))
+ (home-page "https://bioconductor.org/packages/adductomicsR")
+ (synopsis "Processing of adductomic mass spectral datasets")
+ (description
+ "This package @code{adductomicsR} processes data generated by the
+@dfn{second stage of mass spectrometry} (MS2) to identify potentially adducted
+peptides from spectra that has been corrected for mass drift and retention time
+drift and quantifies level mass spectral peaks from @dfn{first stage of mass
+spectrometry} (MS1) data.")
+ (license license:artistic2.0)))
+
(define-public r-aneufinder
(package
(name "r-aneufinder")
--
2.34.0