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[bug#55424] [PATCH 020/602] gnu: Remove pepr.
From: |
Maxim Cournoyer |
Subject: |
[bug#55424] [PATCH 020/602] gnu: Remove pepr. |
Date: |
Sun, 15 May 2022 00:36:47 -0400 |
* gnu/packages/bioinformatics.scm (pepr): Delete variable.
---
gnu/packages/bioinformatics.scm | 26 --------------------------
1 file changed, 26 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 72d033888f..250d075b6e 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8726,32 +8726,6 @@ (define-public piranha
may optionally be provided to further inform the peak-calling process.")
(license license:gpl3+))))
-(define-public pepr
- (package
- (name "pepr")
- (version "1.0.9")
- (source (origin
- (method url-fetch)
- (uri (pypi-uri "PePr" version))
- (sha256
- (base32
- "0qxjfdpl1b1y53nccws2d85f6k74zwmx8y8sd9rszcqhfayx6gdx"))))
- (build-system python-build-system)
- (arguments
- `(#:python ,python-2 ; python2 only
- #:tests? #f)) ; no tests included
- (propagated-inputs
- (list python2-numpy python2-scipy python2-pysam))
- (home-page "https://github.com/shawnzhangyx/PePr")
- (synopsis "Peak-calling and prioritization pipeline for ChIP-Seq data")
- (description
- "PePr is a ChIP-Seq peak calling or differential binding analysis tool
-that is primarily designed for data with biological replicates. It uses a
-negative binomial distribution to model the read counts among the samples in
-the same group, and look for consistent differences between ChIP and control
-group or two ChIP groups run under different conditions.")
- (license license:gpl3+)))
-
(define-public filevercmp
(let ((commit "1a9b779b93d0b244040274794d402106907b71b7")
(revision "1"))
--
2.36.0
- [bug#55424] [PATCH 082/602] gnu: Remove slingshot., (continued)
- [bug#55424] [PATCH 082/602] gnu: Remove slingshot., Maxim Cournoyer, 2022/05/15
- [bug#55424] [PATCH 010/602] gnu: Remove python2-pyalsaaudio., Maxim Cournoyer, 2022/05/15
- [bug#55424] [PATCH 081/602] gnu: renpy: Build with Python 3., Maxim Cournoyer, 2022/05/15
- [bug#55424] [PATCH 050/602] gnu: Remove python2-redis., Maxim Cournoyer, 2022/05/15
- [bug#55424] [PATCH 018/602] gnu: Remove python2-pybigwig., Maxim Cournoyer, 2022/05/15
- [bug#55424] [PATCH 011/602] gnu: Remove ingen., Maxim Cournoyer, 2022/05/15
- [bug#55424] [PATCH 019/602] gnu: tetoolkit: Update to 2.2.1b., Maxim Cournoyer, 2022/05/15
- [bug#55424] [PATCH 052/602] gnu: Remove python2-peewee., Maxim Cournoyer, 2022/05/15
- [bug#55424] [PATCH 043/602] gnu: Remove python2-cov-core., Maxim Cournoyer, 2022/05/15
- [bug#55424] [PATCH 053/602] gnu: Remove python2-ccm., Maxim Cournoyer, 2022/05/15
- [bug#55424] [PATCH 020/602] gnu: Remove pepr.,
Maxim Cournoyer <=
- [bug#55424] [PATCH 021/602] gnu: Remove python2-htseq., Maxim Cournoyer, 2022/05/15
- [bug#55424] [PATCH 027/602] gnu: Remove miso., Maxim Cournoyer, 2022/05/15
- [bug#55424] [PATCH 049/602] gnu: Remove python2-neo4j-driver., Maxim Cournoyer, 2022/05/15
- [bug#55424] [PATCH 057/602] gnu: Remove python2-pymysql., Maxim Cournoyer, 2022/05/15
- [bug#55424] [PATCH 061/602] gnu: Remove ocrodjvu., Maxim Cournoyer, 2022/05/15
[bug#55424] [PATCH 058/602] gnu: Remove python2-hiredis., Maxim Cournoyer, 2022/05/15