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[bug#55424] [PATCH 030/602] gnu: Remove python2-pbcore.
From: |
Maxim Cournoyer |
Subject: |
[bug#55424] [PATCH 030/602] gnu: Remove python2-pbcore. |
Date: |
Sun, 15 May 2022 00:36:57 -0400 |
* gnu/packages/bioinformatics.scm (python2-pbcore): Delete variable.
---
gnu/packages/bioinformatics.scm | 33 ---------------------------------
1 file changed, 33 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index dd811815e0..bda958f6f5 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -5284,39 +5284,6 @@ (define-public orfm
(home-page "https://github.com/wwood/OrfM")
(license license:lgpl3+)))
-(define-public python2-pbcore
- (package
- (name "python2-pbcore")
- (version "1.2.10")
- (source (origin
- (method url-fetch)
- (uri (pypi-uri "pbcore" version))
- (sha256
- (base32
- "1kjmv891d6qbpp4shhhvkl02ff4q5xlpnls2513sm2cjcrs52f1i"))))
- (build-system python-build-system)
- (arguments
- `(#:python ,python-2 ;pbcore < 2.0 requires Python 2.7
- #:phases (modify-phases %standard-phases
- (add-after 'unpack 'remove-sphinx-dependency
- (lambda _
- ;; Sphinx is only required for documentation tests, which
- ;; we do not run; furthermore it depends on
python2-sphinx
- ;; which is no longer maintained.
- (substitute* "requirements-dev.txt"
- (("^sphinx") ""))
- #t)))))
- (propagated-inputs
- (list python2-cython python2-numpy python2-pysam python2-h5py))
- (native-inputs
- (list python2-nose python2-pyxb))
- (home-page "https://pacificbiosciences.github.io/pbcore/")
- (synopsis "Library for reading and writing PacBio data files")
- (description
- "The pbcore package provides Python APIs for interacting with PacBio data
-files and writing bioinformatics applications.")
- (license license:bsd-3)))
-
(define-public prank
(package
(name "prank")
--
2.36.0
- [bug#55424] [PATCH 065/602] gnu: Remove python2-pytest-cache., (continued)
- [bug#55424] [PATCH 065/602] gnu: Remove python2-pytest-cache., Maxim Cournoyer, 2022/05/15
- [bug#55424] [PATCH 075/602] gnu: Remove lekha., Maxim Cournoyer, 2022/05/15
- [bug#55424] [PATCH 023/602] gnu: Remove bamm., Maxim Cournoyer, 2022/05/15
- [bug#55424] [PATCH 062/602] gnu: Remove python2-pandas., Maxim Cournoyer, 2022/05/15
- [bug#55424] [PATCH 017/602] gnu: Remove ribodiff., Maxim Cournoyer, 2022/05/15
- [bug#55424] [PATCH 013/602] gnu: Remove raul-devel., Maxim Cournoyer, 2022/05/15
- [bug#55424] [PATCH 036/602] gnu: Remove python2-nose2., Maxim Cournoyer, 2022/05/15
- [bug#55424] [PATCH 072/602] gnu: Remove omnitux., Maxim Cournoyer, 2022/05/15
- [bug#55424] [PATCH 070/602] gnu: Remove python2-pickleshare., Maxim Cournoyer, 2022/05/15
- [bug#55424] [PATCH 073/602] gnu: Remove childsplay., Maxim Cournoyer, 2022/05/15
- [bug#55424] [PATCH 030/602] gnu: Remove python2-pbcore.,
Maxim Cournoyer <=
- [bug#55424] [PATCH 066/602] gnu: Remove python2-fastlmm., Maxim Cournoyer, 2022/05/15
- [bug#55424] [PATCH 078/602] gnu: Remove python2-keepkey., Maxim Cournoyer, 2022/05/15
- [bug#55424] [PATCH 000/602] Purge Python 2 packages, Guillaume Le Vaillant, 2022/05/15