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[bug#62428] [PATCH 13/14] gnu: Add r-beadarray.
From: |
Mădălin Ionel Patrașcu |
Subject: |
[bug#62428] [PATCH 13/14] gnu: Add r-beadarray. |
Date: |
Sat, 25 Mar 2023 00:18:59 +0100 |
* gnu/packages/bioconductor.scm (r-beadarray): New variable.
---
gnu/packages/bioconductor.scm | 34 ++++++++++++++++++++++++++++++++++
1 file changed, 34 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index e7ab9c983c..6c114efd21 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -17943,6 +17943,40 @@ (define-public r-beachmat
matrices.")
(license license:gpl3)))
+(define-public r-beadarray
+ (package
+ (name "r-beadarray")
+ (version "2.48.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "beadarray" version))
+ (sha256
+ (base32 "0fr24gj6h2rr1r4l3n8myjaihjqi5yinwdsxqa5ih8m3v72dlrby"))))
+ (properties `((upstream-name . "beadarray")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-annotationdbi
+ r-beaddatapackr
+ r-biobase
+ r-biocgenerics
+ r-genomicranges
+ r-ggplot2
+ r-hexbin
+ r-illuminaio
+ r-iranges
+ r-limma
+ r-reshape2))
+ (native-inputs (list r-knitr))
+ (home-page "https://bioconductor.org/packages/beadarray")
+ (synopsis
+ "Quality assessment and low-level analysis for Illumina BeadArray data")
+ (description
+ "The package is able to read bead-level data (raw TIFFs and text files)
+output by BeadScan as well as bead-summary data from BeadStudio. Methods for
+quality assessment and low-level analysis are provided.")
+ (license license:expat)))
+
(define-public r-beadarraysnp
(package
(name "r-beadarraysnp")
--
2.39.2
- [bug#62428] [PATCH 08/14] gnu: Add r-parody., (continued)
- [bug#62428] [PATCH 08/14] gnu: Add r-parody., Mădălin Ionel Patrașcu, 2023/03/24
- [bug#62428] [PATCH 03/14] gnu: Add r-hybridmtest., Mădălin Ionel Patrașcu, 2023/03/24
- [bug#62428] [PATCH 09/14] gnu: Add r-arraymvout., Mădălin Ionel Patrașcu, 2023/03/24
- [bug#62428] [PATCH 11/14] gnu: Add r-setrng., Mădălin Ionel Patrașcu, 2023/03/24
- [bug#62428] [PATCH 07/14] gnu: Add r-mdqc., Mădălin Ionel Patrașcu, 2023/03/24
- [bug#62428] [PATCH 02/14] gnu: Add r-repmis., Mădălin Ionel Patrașcu, 2023/03/24
- [bug#62428] [PATCH 06/14] gnu: Add r-apcomplex., Mădălin Ionel Patrașcu, 2023/03/24
- [bug#62428] [PATCH 10/14] gnu: Add r-arrayquality., Mădălin Ionel Patrașcu, 2023/03/24
- [bug#62428] [PATCH 14/14] gnu: Add r-arrayqualitymetrics., Mădălin Ionel Patrașcu, 2023/03/24
- [bug#62428] [PATCH 12/14] gnu: Add r-beaddatapackr., Mădălin Ionel Patrașcu, 2023/03/24
- [bug#62428] [PATCH 13/14] gnu: Add r-beadarray.,
Mădălin Ionel Patrașcu <=