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[bug#64150] [PATCH 24/24] gnu: bioruby: Update to 2.0.4.
From: |
Christopher Baines |
Subject: |
[bug#64150] [PATCH 24/24] gnu: bioruby: Update to 2.0.4. |
Date: |
Sun, 18 Jun 2023 12:28:51 +0100 |
* gnu/packages/bioinformatics.scm (bioruby): Update to 2.0.4.
[arguments]: Update style.
---
gnu/packages/bioinformatics.scm | 32 ++++++++++++++++----------------
1 file changed, 16 insertions(+), 16 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 9e356cba5d..4edcc28d12 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -10876,34 +10876,34 @@ (define-public bio-blastxmlparser
(define-public bioruby
(package
(name "bioruby")
- (version "1.5.2")
+ (version "2.0.4")
(source
(origin
(method url-fetch)
(uri (rubygems-uri "bio" version))
(sha256
(base32
- "1d56amdsjv1mag7m6gv2w0xij8hqx1v5xbdjsix8sp3yp36m7938"))))
+ "08aknxk2ingwscwfqpw5vnax6jpk1sxfaialravladb63hcl8dx9"))))
(build-system ruby-build-system)
(propagated-inputs
(list ruby-libxml))
(native-inputs
(list which)) ; required for test phase
(arguments
- `(#:phases
- (modify-phases %standard-phases
- (add-before 'build 'patch-test-command
- (lambda _
- (substitute* '("test/functional/bio/test_command.rb")
- (("/bin/sh") (which "sh")))
- (substitute* '("test/functional/bio/test_command.rb")
- (("/bin/ls") (which "ls")))
- (substitute* '("test/functional/bio/test_command.rb")
- (("which") (which "which")))
- (substitute* '("test/functional/bio/test_command.rb",
- "test/data/command/echoarg2.sh")
- (("/bin/echo") (which "echo")))
- #t)))))
+ (list
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-before 'build 'patch-test-command
+ (lambda _
+ (substitute* '("test/functional/bio/test_command.rb")
+ (("/bin/sh") (which "sh")))
+ (substitute* '("test/functional/bio/test_command.rb")
+ (("/bin/ls") (which "ls")))
+ (substitute* '("test/functional/bio/test_command.rb")
+ (("which") (which "which")))
+ (substitute* '("test/functional/bio/test_command.rb"
+ "test/data/command/echoarg2.sh")
+ (("/bin/echo") (which "echo"))))))))
(synopsis "Ruby library, shell and utilities for bioinformatics")
(description "BioRuby comes with a comprehensive set of Ruby development
tools and libraries for bioinformatics and molecular biology. BioRuby has
--
2.40.1
- [bug#64150] [PATCH 15/24] gnu: ruby-rjb: Update to 1.6.7., (continued)
- [bug#64150] [PATCH 15/24] gnu: ruby-rjb: Update to 1.6.7., Christopher Baines, 2023/06/18
- [bug#64150] [PATCH 16/24] gnu: ruby-range-compressor: Update to 1.2.0., Christopher Baines, 2023/06/18
- [bug#64150] [PATCH 17/24] gnu: ruby-pry-doc: Update to 1.4.0., Christopher Baines, 2023/06/18
- [bug#64150] [PATCH 12/24] gnu: ruby-test-unit: Update to 3.6.0., Christopher Baines, 2023/06/18
- [bug#64150] [PATCH 20/24] gnu: ruby-memory-profiler: Update to 1.0.1., Christopher Baines, 2023/06/18
- [bug#64150] [PATCH 22/24] gnu: ruby-debug-inspector: Update to 1.1.0., Christopher Baines, 2023/06/18
- [bug#64150] [PATCH 21/24] gnu: ruby-hocon: Update to 1.4.0., Christopher Baines, 2023/06/18
- [bug#64150] [PATCH 13/24] gnu: ruby-sucker-punch: Update to 3.1.0., Christopher Baines, 2023/06/18
- [bug#64150] [PATCH 10/24] gnu: ruby-yajl-ruby: Update to 1.4.3., Christopher Baines, 2023/06/18
- [bug#64150] [PATCH 18/24] gnu: ruby-powerpack: Update to 0.1.3., Christopher Baines, 2023/06/18
- [bug#64150] [PATCH 24/24] gnu: bioruby: Update to 2.0.4.,
Christopher Baines <=
- [bug#64150] [PATCH 19/24] gnu: ruby-mkmf-lite: Update to 0.5.2., Christopher Baines, 2023/06/18
- [bug#64150] [PATCH 23/24] gnu: ruby-commander: Update to 4.6.0., Christopher Baines, 2023/06/18
- bug#64150: [PATCH 00/24] Various changes to support updating the default ruby., Christopher Baines, 2023/06/20