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[bug#66843] [PATCH 09/11] gnu: Add r-piano.
From: |
Mădălin Ionel Patrașcu |
Subject: |
[bug#66843] [PATCH 09/11] gnu: Add r-piano. |
Date: |
Tue, 31 Oct 2023 11:57:27 +0100 |
* gnu/packages/bioconductor.scm (r-piano): New variable.
Change-Id: I1bc2387563510c47614748423a3b510adc0486aa
---
gnu/packages/bioconductor.scm | 37 +++++++++++++++++++++++++++++++++++
1 file changed, 37 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 6a3606b399..e2fd9c5016 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -9109,6 +9109,43 @@ (define-public r-pfamanalyzer
domain isotypes from pfam data.")
(license license:expat)))
+(define-public r-piano
+ (package
+ (name "r-piano")
+ (version "2.16.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "piano" version))
+ (sha256
+ (base32 "0rm9afgq4n7yinmx09b0xd17wgzhbswm80vcjmmwxr6fv1741xfy"))))
+ (properties `((upstream-name . "piano")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-biobase
+ r-biocgenerics
+ r-dt
+ r-fgsea
+ r-gplots
+ r-htmlwidgets
+ r-igraph
+ r-marray
+ r-relations
+ r-scales
+ r-shiny
+ r-shinydashboard
+ r-shinyjs
+ r-visnetwork))
+ (native-inputs (list r-knitr))
+ (home-page "https://varemo.github.io/piano/")
+ (synopsis "Platform for integrative analysis of omics data")
+ (description
+ "Piano performs gene set analysis using various statistical methods, from
+different gene level statistics and a wide range of gene-set collections. The
+package contains functions for combining the results of multiple runs of gene
+set analyses.")
+ (license license:gpl2+)))
+
;; This is a CRAN package, but it depends on a Bioconductor package:
;; r-aroma-light, r-dnacopy..
(define-public r-pscbs
--
2.41.0
- [bug#66843] [PATCH] gnu: Add r-radiogx, r-coregx, r-piano, r-bench, r-profmem, r-relations, r-magicaxis, r-celestial, r-nistunits, r-r4rna and r-r3cseq., Mădălin Ionel Patrașcu, 2023/10/31
- [bug#66843] [PATCH 01/11] gnu: Add r-r3cseq., Mădălin Ionel Patrașcu, 2023/10/31
- [bug#66843] [PATCH 02/11] gnu: Add r-r4rna., Mădălin Ionel Patrașcu, 2023/10/31
- [bug#66843] [PATCH 08/11] gnu: Add r-bench., Mădălin Ionel Patrașcu, 2023/10/31
- [bug#66843] [PATCH 04/11] gnu: Add r-celestial., Mădălin Ionel Patrașcu, 2023/10/31
- [bug#66843] [PATCH 05/11] gnu: Add r-magicaxis., Mădălin Ionel Patrașcu, 2023/10/31
- [bug#66843] [PATCH 07/11] gnu: Add r-profmem., Mădălin Ionel Patrașcu, 2023/10/31
- [bug#66843] [PATCH 03/11] gnu: Add r-nistunits., Mădălin Ionel Patrașcu, 2023/10/31
- [bug#66843] [PATCH 11/11] gnu: Add r-radiogx., Mădălin Ionel Patrașcu, 2023/10/31
- [bug#66843] [PATCH 09/11] gnu: Add r-piano.,
Mădălin Ionel Patrașcu <=
- [bug#66843] [PATCH 10/11] gnu: Add r-coregx., Mădălin Ionel Patrașcu, 2023/10/31
- [bug#66843] [PATCH 06/11] gnu: Add r-relations., Mădălin Ionel Patrașcu, 2023/10/31
- bug#66843: [PATCH] gnu: Add r-radiogx, r-coregx, r-piano, r-bench, r-profmem, r-relations, r-magicaxis, r-celestial, r-nistunits, r-r4rna and r-r3cseq., Ricardo Wurmus, 2023/10/31