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[bug#66966] [PATCH 12/13] gnu: Add r-bbcanalyzer.
From: |
Mădălin Ionel Patrașcu |
Subject: |
[bug#66966] [PATCH 12/13] gnu: Add r-bbcanalyzer. |
Date: |
Mon, 6 Nov 2023 12:06:48 +0100 |
* gnu/packages/bioconductor.scm (r-bbcanalyzer): New variable.
Change-Id: Icd3c77c9522d73638ddb0934ad332ddb7b947a8e
---
gnu/packages/bioconductor.scm | 30 ++++++++++++++++++++++++++++++
1 file changed, 30 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index a8fa9d7af4..384bb7cbdf 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -22550,6 +22550,36 @@ (define-public r-baynorm
point estimates from posterior (2D array) or samples from posterior (3D
array).")
(license license:gpl2+)))
+(define-public r-bbcanalyzer
+ (package
+ (name "r-bbcanalyzer")
+ (version "1.32.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "BBCAnalyzer" version))
+ (sha256
+ (base32 "108jcgsf5hyj348y17hcw8m3zcfjgzpx8nz4n5jgxp2lgxjyizy1"))))
+ (properties `((upstream-name . "BBCAnalyzer")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-biostrings
+ r-genomicranges
+ r-iranges
+ r-rsamtools
+ r-summarizedexperiment
+ r-variantannotation))
+ (home-page "https://bioconductor.org/packages/BBCAnalyzer")
+ (synopsis "Visualizing base counts")
+ (description
+ "BBCAnalyzer is a package for visualizing the relative or absolute number
+of bases, deletions and insertions at defined positions in sequence alignment
+data available as bam files in comparison to the reference bases. Markers for
+the relative base frequencies, the mean quality of the detected bases, known
+mutations or polymorphisms and variants called in the data may additionally be
+included in the plots.")
+ (license license:lgpl3)))
+
(define-public r-biocthis
(package
(name "r-biocthis")
--
2.41.0
- [bug#66966] [PATCH 01/13] gnu: Add r-breastcancervdx., (continued)
- [bug#66966] [PATCH 01/13] gnu: Add r-breastcancervdx., Mădălin Ionel Patrașcu, 2023/11/06
- [bug#66966] [PATCH 05/13] gnu: Add r-basics., Mădălin Ionel Patrașcu, 2023/11/06
- [bug#66966] [PATCH 02/13] gnu: Add r-bags., Mădălin Ionel Patrașcu, 2023/11/06
- [bug#66966] [PATCH 10/13] gnu: Add r-bb., Mădălin Ionel Patrașcu, 2023/11/06
- [bug#66966] [PATCH 04/13] gnu: Add r-basic4cseq., Mădălin Ionel Patrașcu, 2023/11/06
- [bug#66966] [PATCH 07/13] gnu: Add r-bayesknockdown., Mădălin Ionel Patrașcu, 2023/11/06
- [bug#66966] [PATCH 11/13] gnu: Add r-baynorm., Mădălin Ionel Patrașcu, 2023/11/06
- [bug#66966] [PATCH 13/13] gnu: Add r-bcrank., Mădălin Ionel Patrașcu, 2023/11/06
- [bug#66966] [PATCH 09/13] gnu: Add r-bayesspace., Mădălin Ionel Patrașcu, 2023/11/06
- [bug#66966] [PATCH 08/13] gnu: Add r-rcppdist., Mădălin Ionel Patrașcu, 2023/11/06
- [bug#66966] [PATCH 12/13] gnu: Add r-bbcanalyzer.,
Mădălin Ionel Patrașcu <=
- [bug#66966] [PATCH 03/13] gnu: Add r-bsgenome-ecoli-ncbi-20080805., Mădălin Ionel Patrașcu, 2023/11/06
- [bug#66966] [PATCH 06/13] gnu: Add r-basicstarrseq., Mădălin Ionel Patrașcu, 2023/11/06
- bug#66966: [PATCH 01/13] gnu: Add r-breastcancervdx., Ricardo Wurmus, 2023/11/13