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[bug#68056] [PATCH 3/3] gnu: Add r-projectils.
From: |
Mădălin Ionel Patrașcu |
Subject: |
[bug#68056] [PATCH 3/3] gnu: Add r-projectils. |
Date: |
Wed, 27 Dec 2023 11:02:36 +0100 |
* gnu/packages/bioinformatics.scm (r-projectils): New variable.
Change-Id: Ia975cfcb9c79e59b029c6839dc87b5dcb89bf72a
---
gnu/packages/bioinformatics.scm | 45 +++++++++++++++++++++++++++++++++
1 file changed, 45 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index d736abe07e..f959de7cd6 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -10247,6 +10247,51 @@ (define-public r-premessa
bead-based normalization and debarcoding.")
(license license:gpl3))))
+(define-public r-projectils
+ (let ((commit "cc73b97471b4b6eea11ce779b5c4a7dc5c3e1709")
+ (revision "1"))
+ (package
+ (name "r-projectils")
+ (version (git-version "3.0.0" revision commit))
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/carmonalab/ProjecTILs")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "0dpzvbhhb9andnj7angpj32cgkwd6rs6qgpl6i21pqzcn6vqqhqw"))))
+ (properties `((upstream-name . "ProjecTILs")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-biocneighbors
+ r-biocparallel
+ r-dplyr
+ r-ggplot2
+ r-matrix
+ r-patchwork
+ r-pheatmap
+ r-pracma
+ r-purrr
+ r-rcolorbrewer
+ r-reshape2
+ r-scales
+ r-scgate
+ r-seurat
+ r-seuratobject
+ r-stacas
+ r-ucell
+ r-umap
+ r-uwot))
+ (home-page "https://github.com/carmonalab/ProjecTILs")
+ (synopsis "Reference-based analysis of scRNA-seq data")
+ (description
+ "This package implements methods to project single-cell RNA-seq data
onto
+a reference atlas, enabling interpretation of unknown cell transcriptomic
states
+in the the context of known, reference states.")
+ (license license:gpl3))))
+
(define-public r-presto
(let ((commit "052085db9c88aa70a28d11cc58ebc807999bf0ad")
(revision "0"))
--
2.41.0