Re: Conda environments and reproducibility

[Thibault Lestang]

Simon Tournier <zimon.toutoune@gmail.com> writes:

> Well, we have not spoken about running something.  We could also write a
> small Python script plotting something using Numpy and/or Scipy and try
> to run the Seurat vignette.
>
> From my experience, after some months (from 2-3 to 6), Conda will fail.
> Especially after an update of the system (apt upgrade)–and it can worse
> with a ’dist-upgrade’. :-)

Well let's see. I just set up a Gitlab repo with a weekly pipeline (re)creating
a conda env from an environment.yml spec I generated earlier this morning.

https://framagit.org/tlestang/conda-python-example

Just Python for now but anyone feel free to contribute an R env as well.

-- Thibault