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octave 64-bit and multi-threading
From: |
Grothausmann, Roman Dr. |
Subject: |
octave 64-bit and multi-threading |
Date: |
Mon, 20 Jul 2015 21:37:23 +0200 |
User-agent: |
Mozilla/5.0 (X11; Linux x86_64; rv:31.0) Gecko/20100101 Icedove/31.7.0 |
Dear mailing list members,
Using instructions from
https://www.gnu.org/software/octave/doc/interpreter/Compiling-Octave-with-64_002dbit-Indexing.html
I managed to compile octave-4.0.0 with --enable-64 using a 64-bit atlas library
under debian.
The test
a = zeros (1024*1024*1024*3, 1, 'int8');
works.
I was also able to load 10GB units with fread and do some computations with it
successfully.
According to
http://stackoverflow.com/questions/11889118/get-gnu-octave-to-work-with-a-multicore-processor-multithreading
octave should be multi-threaded when using a self-compiled atlas lib.
However the test
tic
bigMatrixA = rand(3000000,80);
bigMatrixB = rand(80,30);
bigMatrixC = bigMatrixA * bigMatrixB;
toc
disp("done");
takes 4.8s with the debian default octave (3.8.2 32-bit)
and 7.1s with my self-compiled octave (4.0.0 64-bit)
Is it slower because it is now 64-bit?
Are there better test for multi-threading in octave?
Thanks for any help or hints
Roman
PS:
it says on the instruction page: "Suggestions on how to compile ATLAS would be
most welcome."
I did it as debian/README.Debian of the source-package of debian suggests, so
basically:
apt-get source atlas
apt-get build-dep atlas
for i in {0..23}; do echo "performance" >
/sys/devices/system/cpu/cpu$i/cpufreq/scaling_governor; cat
/sys/devices/system/cpu/cpu$i/cpufreq/scaling_governor; done
cd atlas-3.8.4/
adding in debian/rules to COMMON_CONFIG_PARAMS:
-Fa if '-fdefault-integer-8 -fPIC' \
fakeroot debian/rules custom
cd
apt-get autoremove libopenblas-base
apt-get autoremove libatlas3-base
apt-get autoremove libblas3 #reinstalls libatlas3-base
dpkg -i libatlas3-base_3.8.4-9+deb7u1+custom10_amd64.deb #replaces
libatlas3-base
dpkg -i libatlas-dev_3.8.4-9+deb7u1+custom10_all.deb
libatlas-base-dev_3.8.4-9+deb7u1+custom10_amd64.deb
--
Dr. Roman Grothausmann
Tomographie und Digitale Bildverarbeitung
Tomography and Digital Image Analysis
Institut für Funktionelle und Angewandte Anatomie, OE 4120
Medizinische Hochschule Hannover
Carl-Neuberg-Str. 1
D-30625 Hannover
Tel. +49 511 532-2900
- octave 64-bit and multi-threading,
Grothausmann, Roman Dr. <=