Re: octave 5.2.0 parallel package install -forge fails on mac os

[Maria Jose Casas Serrano]

Hi, 

Olaf, I’ve been looking for information about your comment without any success…. (I copied and pasted it manually while executing. You can see the output below)

“I can't say why your pkg() installation doesn't print out the error messages, as it normally does…”

 

Yesterday I tried several options. I uninstalled all the packages (matgeom, control, struct) to start from scratch but now control pkg cannot be installed either. I’ll open another thread for that in case it’s a problem with incompatibilities of version.

This is my octave path (in case this shows that something is missing):

/Users/mariajcasas/Workspace/plants/  (plus all the subfolders which are omitted here for simplification)

/usr/local/Cellar/octave/5.2.0_4/share/octave/site/m

/usr/local/Cellar/octave/5.2.0_4/share/octave/site/m/startup

/usr/local/Cellar/octave/5.2.0_4/lib/octave/5.2.0/oct/x86_64-apple-darwin19.3.0

/usr/local/Cellar/octave/5.2.0_4/share/octave/5.2.0/m

/usr/local/Cellar/octave/5.2.0_4/share/octave/5.2.0/m/audio

/usr/local/Cellar/octave/5.2.0_4/share/octave/5.2.0/m/deprecated

/usr/local/Cellar/octave/5.2.0_4/share/octave/5.2.0/m/elfun

/usr/local/Cellar/octave/5.2.0_4/share/octave/5.2.0/m/general

/usr/local/Cellar/octave/5.2.0_4/share/octave/5.2.0/m/geometry

/usr/local/Cellar/octave/5.2.0_4/share/octave/5.2.0/m/gui

/usr/local/Cellar/octave/5.2.0_4/share/octave/5.2.0/m/help

/usr/local/Cellar/octave/5.2.0_4/share/octave/5.2.0/m/image

/usr/local/Cellar/octave/5.2.0_4/share/octave/5.2.0/m/io

/usr/local/Cellar/octave/5.2.0_4/share/octave/5.2.0/m/java

/usr/local/Cellar/octave/5.2.0_4/share/octave/5.2.0/m/legacy

/usr/local/Cellar/octave/5.2.0_4/share/octave/5.2.0/m/linear-algebra

/usr/local/Cellar/octave/5.2.0_4/share/octave/5.2.0/m/miscellaneous

/usr/local/Cellar/octave/5.2.0_4/share/octave/5.2.0/m/ode

/usr/local/Cellar/octave/5.2.0_4/share/octave/5.2.0/m/optimization

/usr/local/Cellar/octave/5.2.0_4/share/octave/5.2.0/m/path

/usr/local/Cellar/octave/5.2.0_4/share/octave/5.2.0/m/pkg

/usr/local/Cellar/octave/5.2.0_4/share/octave/5.2.0/m/plot

/usr/local/Cellar/octave/5.2.0_4/share/octave/5.2.0/m/plot/appearance

/usr/local/Cellar/octave/5.2.0_4/share/octave/5.2.0/m/plot/draw

/usr/local/Cellar/octave/5.2.0_4/share/octave/5.2.0/m/plot/util

/usr/local/Cellar/octave/5.2.0_4/share/octave/5.2.0/m/polynomial

/usr/local/Cellar/octave/5.2.0_4/share/octave/5.2.0/m/prefs

/usr/local/Cellar/octave/5.2.0_4/share/octave/5.2.0/m/profiler

/usr/local/Cellar/octave/5.2.0_4/share/octave/5.2.0/m/set

/usr/local/Cellar/octave/5.2.0_4/share/octave/5.2.0/m/signal

/usr/local/Cellar/octave/5.2.0_4/share/octave/5.2.0/m/sparse

/usr/local/Cellar/octave/5.2.0_4/share/octave/5.2.0/m/specfun

/usr/local/Cellar/octave/5.2.0_4/share/octave/5.2.0/m/special-matrix

/usr/local/Cellar/octave/5.2.0_4/share/octave/5.2.0/m/startup

/usr/local/Cellar/octave/5.2.0_4/share/octave/5.2.0/m/statistics

/usr/local/Cellar/octave/5.2.0_4/share/octave/5.2.0/m/strings

/usr/local/Cellar/octave/5.2.0_4/share/octave/5.2.0/m/testfun

/usr/local/Cellar/octave/5.2.0_4/share/octave/5.2.0/m/time

/usr/local/Cellar/octave/5.2.0_4/share/octave/5.2.0/data

/Users/mariajcasas/octave/struct-1.0.16 ( plus the subfolders of this package…)

/Users/mariajcasas/octave/slf4o-0.2.0-SNAPSHOT ( plus the subfolders of this package…)

/Users/mariajcasas/octave/matgeom-1.2.2. ( plus the subfolders of this package…)

These are the packages already installed:

Package Name  | Version        | Installation directory

--------------+------------------------+-----------------------

matgeom *|                     1.2.2 | /Users/mariajcasas/octave/matgeom-1.2.2

       slf4o *| 0.2.0-SNAPSHOT | /Users/mariajcasas/octave/slf4o-0.2.0-SNAPSHOT

      struct *|                    1.0.16 | /Users/mariajcasas/octave/struct-1.0.16

And this is the output of the parallel package installation:

octave:3> pkg install -verbose -forge parallel

mkdir (/var/folders/0r/q6jp7b890bz3cd9tsslgtsm00000gn/T/oct-UyhXQT)

untar (/Users/mariajcasas/Workspace/plants/parallel-3.1.3.tar.gz, /var/folders/0r/q6jp7b890bz3cd9tsslgtsm00000gn/T/oct-UyhXQT)

checking for mkoctfile... /usr/local/Cellar/octave/5.2.0_4/bin/mkoctfile-5.2.0 --verbose

checking for octave-config... /usr/local/Cellar/octave/5.2.0_4/bin/octave-config-5.2.0

checking for a sed that does not truncate output... /usr/bin/sed

checking whether the C++ compiler works... yes

checking for C++ compiler default output file name... a.out

checking for suffix of executables... 

checking whether we are cross compiling... no

checking for suffix of object files... o

checking whether we are using the GNU C++ compiler... yes

checking whether clang++ -std=gnu++11 accepts -g... yes

checking for clang++ -std=gnu++11 option to enable C++11 features... none needed

checking how to run the C++ preprocessor... clang++ -std=gnu++11 -E

checking for gcc... clang

checking whether we are using the GNU C compiler... yes

checking whether clang accepts -g... yes

checking for clang option to enable C11 features... none needed

checking how to run the C preprocessor... clang -E

checking for grep that handles long lines and -e... /usr/bin/grep

checking for egrep... /usr/bin/grep -E

checking for ANSI C header files... yes

checking for sys/types.h... yes

checking for sys/stat.h... yes

checking for stdlib.h... yes

checking for string.h... yes

checking for memory.h... yes

checking for strings.h... yes

checking for inttypes.h... yes

checking for stdint.h... yes

checking for unistd.h... yes

checking gnutls/gnutls.h usability... no

checking gnutls/gnutls.h presence... no

checking for gnutls/gnutls.h... no

configure: WARNING: TLS disabled since gnutls/gnutls.h not found or not compilable

checking sys/socket.h usability... yes

checking sys/socket.h presence... yes

checking for sys/socket.h... yes

checking for socket... yes

checking arpa/inet.h usability... yes

checking arpa/inet.h presence... yes

checking for arpa/inet.h... yes

checking fcntl.h usability... yes

checking fcntl.h presence... yes

checking for fcntl.h... yes

checking limits.h usability... yes

checking limits.h presence... yes

checking for limits.h... yes

checking malloc.h usability... no

checking malloc.h presence... no

checking for malloc.h... no

checking sys/malloc.h usability... yes

checking sys/malloc.h presence... yes

checking for sys/malloc.h... yes

checking netdb.h usability... yes

checking netdb.h presence... yes

checking for netdb.h... yes

checking netinet/in.h usability... yes

checking netinet/in.h presence... yes

checking for netinet/in.h... yes

checking stdio_ext.h usability... no

checking stdio_ext.h presence... no

checking for stdio_ext.h... no

checking for stdlib.h... (cached) yes

checking for string.h... (cached) yes

checking sys/time.h usability... yes

checking sys/time.h presence... yes

checking for sys/time.h... yes

checking termios.h usability... yes

checking termios.h presence... yes

checking for termios.h... yes

checking for unistd.h... (cached) yes

checking for stdbool.h that conforms to C99... yes

checking for _Bool... yes

checking for int32_t... yes

checking for mode_t... yes

checking for pid_t... yes

checking for size_t... yes

checking for ssize_t... yes

checking for uint32_t... yes

checking for error_at_line... no

checking vfork.h usability... no

checking vfork.h presence... no

checking for vfork.h... no

checking for fork... yes

checking for vfork... yes

checking for working fork... yes

checking for working vfork... (cached) yes

checking for _LARGEFILE_SOURCE value needed for large files... no

checking for stdlib.h... (cached) yes

checking for GNU libc compatible malloc... yes

checking return type of signal handlers... void

checking for memset... yes

checking for mkdir... yes

checking for modf... yes

checking for select... yes

checking for strchr... yes

checking for strdup... yes

checking for uname... yes

checking for getpass... yes

checking octave/interpreter.h usability... yes

checking octave/interpreter.h presence... yes

checking for octave/interpreter.h... yes

checking   octave_execution_exception or octave::execution_exception... octave::execution_exception

checking   file_ops or octave::sys::file_ops... octave::sys::file_ops

checking   octave::application or octave::interpreter... octave::interpreter

checking   symbol_table::assign or octave::interpreter::the_interpreter () -> get_symbol_table ().assign... octave::interpreter::the_interpreter () -> get_symbol_table ().assign

checking   symbol_table::is_global or octave::interpreter::the_interpreter () -> get_current_scope ().is_global... octave::interpreter::the_interpreter () -> get_current_scope ().is_global

checking   oct_mach_info or octave::mach_info...   oct_mach_info

checking   octave_stream_list::get_file_number or octave::interpreter::the_interpreter () -> get_stream_list ().get_file_number... 

checking   octave_stream_list::lookup or octave::interpreter::the_interpreter () -> get_stream_list ().lookup... octave::interpreter::the_interpreter () -> get_stream_list ().lookup

checking   octave_child_list:: or octave::interpreter::the_interpreter () -> get_child_list ().... octave::interpreter::the_interpreter () -> get_child_list ().

checking   octave_call_stack::goto_caller_frame or octave::interpreter::the_interpreter () -> get_call_stack ().goto_caller_frame... octave::interpreter::the_interpreter () -> get_call_stack ().goto_caller_frame

checking   unwind_protect or octave::unwind_protect... octave::unwind_protect

checking   is_empty or isempty... isempty

checking   is_real_type or isreal... isreal

checking   is_vector or isvector... isvector

checking   octave_stream or octave::stream... octave::stream

checking   octave_refcount or octave::refcount... octave::refcount

checking   feval or octave::feval... octave::feval

checking   eval_string or octave::eval_string... octave::eval_string

checking   file_stat or octave::sys::file_stat... octave::sys::file_stat

checking   add_fcn (octave_call_stack::pop) or add_method (octave::interpreter::the_interpreter () -> get_call_stack (), &octave::call_stack::pop)... add_method (octave::interpreter::the_interpreter () -> get_call_stack (), &octave::call_stack::pop)

checking for octave::config::octave_home ()... yes

configure: creating ./config.status

config.status: creating Makefile

config.status: creating config.h

CXX="clang++ -std=gnu++11" CXXFLAGS="-g -O2  " /usr/local/Cellar/octave/5.2.0_4/bin/mkoctfile-5.2.0 --verbose -c pconnect.cc

CXX="clang++ -std=gnu++11" CXXFLAGS="-g -O2  " /usr/local/Cellar/octave/5.2.0_4/bin/mkoctfile-5.2.0 --verbose -c pserver.cc

CXX="clang++ -std=gnu++11" CXXFLAGS="-g -O2  " /usr/local/Cellar/octave/5.2.0_4/bin/mkoctfile-5.2.0 --verbose -c sclose.cc

CXX="clang++ -std=gnu++11" CXXFLAGS="-g -O2  " /usr/local/Cellar/octave/5.2.0_4/bin/mkoctfile-5.2.0 --verbose -c reval.cc

clang++ -std=gnu++11 -c -I/usr/local/opt/qt/include -fPIC -I/usr/local/Cellar/octave/5.2.0_4/include/octave-5.2.0/octave/.. -I/usr/local/Cellar/octave/5.2.0_4/include/octave-5.2.0/octave -I/usr/local/Cellar/octave/5.2.0_4/include  -D_THREAD_SAFE -pthread -g -O2      pconnect.cc -o pconnect.o

clang++ -std=gnu++11 -c -I/usr/local/opt/qt/include -fPIC -I/usr/local/Cellar/octave/5.2.0_4/include/octave-5.2.0/octave/.. -I/usr/local/Cellar/octave/5.2.0_4/include/octave-5.2.0/octave -I/usr/local/Cellar/octave/5.2.0_4/include  -D_THREAD_SAFE -pthread -g -O2      sclose.cc -o sclose.o

clang++ -std=gnu++11 -c -I/usr/local/opt/qt/include -fPIC -I/usr/local/Cellar/octave/5.2.0_4/include/octave-5.2.0/octave/.. -I/usr/local/Cellar/octave/5.2.0_4/include/octave-5.2.0/octave -I/usr/local/Cellar/octave/5.2.0_4/include  -D_THREAD_SAFE -pthread -g -O2      pserver.cc -o pserver.o

clang++ -std=gnu++11 -c -I/usr/local/opt/qt/include -fPIC -I/usr/local/Cellar/octave/5.2.0_4/include/octave-5.2.0/octave/.. -I/usr/local/Cellar/octave/5.2.0_4/include/octave-5.2.0/octave -I/usr/local/Cellar/octave/5.2.0_4/include  -D_THREAD_SAFE -pthread -g -O2      reval.cc -o reval.o

pserver.cc:142:16: warning: 'eval_string' is deprecated [-Wdeprecated-declarations]

      SET_ERR (OCTAVE__EVAL_STRING (s, false, p_err, 0), err);

               ^

./config.h:150:37: note: expanded from macro 'OCTAVE__EVAL_STRING'

#define OCTAVE__EVAL_STRING octave::eval_string

                                    ^

/usr/local/Cellar/octave/5.2.0_4/include/octave-5.2.0/octave/../octave/parse.h:587:3: note: 'eval_string' has been explicitly marked deprecated here

  OCTAVE_DEPRECATED (5, "use 'octave::interpreter::eval_string' instead")

  ^

/usr/local/Cellar/octave/5.2.0_4/include/octave-5.2.0/octave/octave-config.h:73:59: note: expanded from macro 'OCTAVE_DEPRECATED'

#      define OCTAVE_DEPRECATED(ver, msg) __attribute__ ((__deprecated__))

                                                          ^

pserver.cc:172:13: error: use of undeclared identifier 'command_editor'; did you mean 'octave::command_editor'?

            command_editor::increment_current_command_number ();

            ^~~~~~~~~~~~~~

            octave::command_editor

/usr/local/Cellar/octave/5.2.0_4/include/octave-5.2.0/octave/../octave/cmd-edit.h:39:3: note: 'octave::command_editor' declared here

  command_editor

  ^

pconnect.cc:536:35: error: use of undeclared identifier 'octave_env'

          std::string directory = octave_env::get_current_directory ();

                                  ^

pserver.cc:1119:23: error: use of undeclared identifier 'octave_env'

          int cd_ok = octave_env::chdir (directory.c_str ());

                      ^

pserver.cc:1122:13: error: use of undeclared identifier 'octave_env'

            octave_env::chdir ("/tmp");

            ^

1 error generated.

make: *** [pconnect.o] Error 1

make: *** Waiting for unfinished jobs....

1 warning and 3 errors generated.

make: *** [pserver.o] Error 1

pkg: error running `make' for the parallel package.

error: called from

    configure_make at line 99 column 9

    install at line 190 column 7

    pkg at line 441 column 9

Any clue would be appreciated. I’m stuck here.

Thanks

Maria J

On 14 Apr 2020, at 20:05, Olaf Till <address@hidden> wrote:

On Tue, Apr 14, 2020 at 06:42:46PM +0200, Maria Jose Casas Serrano wrote:

Getting some warnings and errors. See the attached diary file.

All I can see from the attached file is that there was some error,
probably in compiling fsave.cc, but not which error. I can't say why
your pkg() installation doesn't print out the error messages, as it
normally does...

Olaf

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