[Octave-bug-tracker] [bug #54099] Problem in installation of parallel-3.1.2.tar.gz + octave 4.2.2 in HPC, undefined symbol: gnutls_srp_base64_decode_alloc

[anonymous]

URL:
  <http://savannah.gnu.org/bugs/?54099>

                 Summary: Problem in installation of parallel-3.1.2.tar.gz +
octave 4.2.2 in HPC, undefined symbol: gnutls_srp_base64_decode_alloc
                 Project: GNU Octave
            Submitted by: None
            Submitted on: Mon 11 Jun 2018 04:38:22 PM UTC
                Category: Octave Forge Package
                Severity: 3 - Normal
                Priority: 5 - Normal
              Item Group: Build Failure
                  Status: None
             Assigned to: None
         Originator Name: Ivan Spisso
        Originator Email: address@hidden
             Open/Closed: Open
         Discussion Lock: Any
                 Release: 4.2.2
        Operating System: GNU/Linux

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Details:

Hi,

I am trying to install octave in HPC cluster, MArconi A1 bdw based cluser

https://wiki.u-gov.it/confluence/display/SCAIUS/UG3.1%3A+MARCONI+UserGuide

I have installed octave 4.2.2 with gnutls/


address@hidden ~]$ module li
Currently Loaded Modulefiles:
 1) profile/global
 2) autoload
 3) profile/advanced
 4) jdk/1.8.0_111
 5) gnu/6.1.0
 6) zlib/1.2.8--gnu--6.1.0
 7) blas/3.6.0--gnu--6.1.0
 8) lapack/3.6.1--gnu--6.1.0
 9) szip/2.1--gnu--6.1.0
10) hdf5/1.8.17--gnu--6.1.0
11) openmpi/1-10.3--gnu--6.1.0
12) fftw/3.3.4--openmpi--1-10.3--gnu--6.1.0
13) libnettle/3.4--gnu--6.1.0
14) gmp/6.1.1--gnu--6.1.0
15) gnutls/3.6.2--gnu--6.1.0
16) octave/4.2.2


I have tried to install struct-1.0.14.tar.gz + parallel-3.1.2.tar.gz package

Everything seems fine, except at the end when the parallel package has to
installed. 

The installation fails at the end with

/marconi/home/userinternal/ispisso0/octave/parallel-3.1.2/x86_64-pc-linux-gnu-api-v51/parallel_generate_srp_data.oct:
failed to load:
/marconi/home/userinternal/ispisso0/octave/parallel-3.1.2/x86_64-pc-linux-gnu-api-v51/parallel_generate_srp_data.oct:
undefined symbol: gnutls_srp_base64_decode_alloc
error: called from

Looking to the installation path

Looking at the installation path

/cineca/prod/opt/libraries/gnutls/3.6.2/gnu--6.1.0/share/man/man3/

address@hidden ~]$ ls
/cineca/prod/opt/libraries/gnutls/3.6.2/gnu--6.1.0/share/man/man3/gnutls_srp_base64_decode*
../man3/gnutls_srp_base64_decode2.3
../man3/gnutls_srp_base64_decode.3

The API

/man3/gnutls_srp_base64_decode_alloc.3

is missing, but it seems that the API decode_alloc.3 has been replaced in the
version 3.4.10 by _decode2.3

http://mail-index.netbsd.org/pkgsrc-wip-changes/2016/03/23/msg002234.html

man/man3/gnutls_srp_base64_decode.3
-man/man3/gnutls_srp_base64_decode_alloc.3
+man/man3/gnutls_srp_base64_decode2.3

I have also tried version gnutls/3.5.8--gnu--6.1.0 but same issue 

This bug prevents the use of octave in parallel in our cluster 
Find attached the compilation and installation log of octave 

Please, let me know if you need some installation / compilation logs 

Thanks

Ivan 



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File Attachments:


-------------------------------------------------------
Date: Mon 11 Jun 2018 04:38:22 PM UTC  Name: BUILD_LOGS  Size: 2MiB   By: None

<http://savannah.gnu.org/bugs/download.php?file_id=44358>

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