[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]
[Octave-bug-tracker] [bug #65866] make check: Fatal segmentation fault w
|
From: |
Atri Bhattacharya |
|
Subject: |
[Octave-bug-tracker] [bug #65866] make check: Fatal segmentation fault when running image/getframe.m test |
|
Date: |
Mon, 10 Jun 2024 05:52:47 -0400 (EDT) |
URL:
<https://savannah.gnu.org/bugs/?65866>
Summary: make check: Fatal segmentation fault when running
image/getframe.m test
Group: GNU Octave
Submitter: badshah400
Submitted: Mon 10 Jun 2024 09:52:47 AM UTC
Category: Test Suite
Severity: 3 - Normal
Priority: 5 - Normal
Item Group: Segfault, Bus Error, etc.
Status: None
Assigned to: None
Originator Name:
Originator Email:
Open/Closed: Open
Release: 9.2.0
Discussion Lock: Any
Operating System: GNU/Linux
Fixed Release: None
Planned Release: None
_______________________________________________________
Follow-up Comments:
-------------------------------------------------------
Date: Mon 10 Jun 2024 09:52:47 AM UTC By: Atri Bhattacharya <badshah400>
Hi,
While trying to build a RPM package for openSUSE Tumbleweed, we run make check
to ensure the test-suite succeeds. However, with version 9.2.0, we find that
the test-suite encounters a segfault that leads to the test-suite failing. The
relevant snippet from the full build log (attached) is as follows:
[ 1129s] image/getframe.m
...............................................fatal: caught signal
Segmentation fault -- stopping myself...
[ 1129s] /usr/bin/bash: line 1: 29829 Segmentation fault ( /usr/bin/bash
../run-octave --no-init-file --silent --no-history -p
/home/abuild/rpmbuild/BUILD/octave-9.2.0/t
est/mex /home/abuild/rpmbuild/BUILD/octave-9.2.0/test/fntests.m
/home/abuild/rpmbuild/BUILD/octave-9.2.0/test "" )
[ 1129s] make[4]: *** [Makefile:3202: check-local] Error 139
[ 1129s] make[4]: Leaving directory
'/home/abuild/rpmbuild/BUILD/octave-9.2.0/test'
[ 1129s] make[3]: *** [Makefile:3050: check-am] Error 2
[ 1129s] make[3]: Leaving directory
'/home/abuild/rpmbuild/BUILD/octave-9.2.0/test'
[ 1129s] make[2]: *** [Makefile:3052: check] Error 2
[ 1129s] make[2]: Leaving directory
'/home/abuild/rpmbuild/BUILD/octave-9.2.0/test'
[ 1129s] make[1]: *** [Makefile:28220: check-recursive] Error 1
[ 1129s] make[1]: Leaving directory
'/home/abuild/rpmbuild/BUILD/octave-9.2.0'
[ 1129s] make: *** [Makefile:28518: check] Error 2
Thanks in advance for any suggestions to fix/work around this.
----
Here are some package versions that may help in diagnosing the issue:
* GCC 13.3
* Qt 6.7.1
* java-21-openjdk 21.0.3
The following is the status after running configure:
[ 117s] Octave is now configured for x86_64-suse-linux-gnu
[ 117s]
[ 117s] Source directory: .
[ 117s] Installation prefix: /usr
[ 117s] C compiler: gcc -pthread -fopenmp -fexceptions
-Wall -W -Wshadow -Wformat -Wpointer-arith -Wmissing-prototypes
-Wstrict-prototypes -Wwrite-strings -Wcast-align -Wcast-qual -O2 -Wall
-U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables
-fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type
-flto=auto -g
[ 117s] C++ compiler: g++ -pthread -fopenmp -Wall -W
-Wshadow -Woverloaded-virtual -Wold-style-cast -Wformat -Wpointer-arith
-Wwrite-strings -Wcast-align -Wcast-qual -O2 -Wall -U_FORTIFY_SOURCE
-D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables
-fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type
-flto=auto -g
[ 117s] Fortran compiler: gfortran -O2 -Wall -U_FORTIFY_SOURCE
-D_FORTIFY_SOURCE=3 -fstack-protector-strong -funwind-tables
-fasynchronous-unwind-tables -fstack-clash-protection -Werror=return-type
-flto=auto -g -std=legacy -fexceptions
[ 117s] CPPFLAGS:
[ 117s] Fortran libraries:
-L/usr/lib64/gcc/x86_64-suse-linux/13
-L/usr/lib64/gcc/x86_64-suse-linux/13/../../../../lib64 -L/lib/../lib64
-L/usr/lib/../lib64
-L/usr/lib64/gcc/x86_64-suse-linux/13/../../../../x86_64-suse-linux/lib
-L/usr/lib64/gcc/x86_64-suse-linux/13/../../.. -lgfortran -lm -lquadmath
[ 117s] Lex libraries:
[ 117s] LIBS: -lpthread -lm
[ 117s] LDFLAGS: -flto=auto
[ 117s] Extra LDFLAGS:
[ 117s]
[ 117s] AMD CPPFLAGS: -I/usr/include/suitesparse
[ 117s] AMD LDFLAGS:
[ 117s] AMD libraries: -lamd
[ 117s] ARPACK CPPFLAGS: -I/usr/include/arpack
[ 117s] ARPACK LDFLAGS:
[ 117s] ARPACK libraries: -larpack
[ 117s] BLAS libraries: -lopenblas
[ 117s] BZ2 CPPFLAGS:
[ 117s] BZ2 LDFLAGS:
[ 117s] BZ2 libraries: -lbz2
[ 117s] CAMD CPPFLAGS: -I/usr/include/suitesparse
[ 117s] CAMD LDFLAGS:
[ 117s] CAMD libraries: -lcamd
[ 117s] CARBON libraries:
[ 117s] CCOLAMD CPPFLAGS: -I/usr/include/suitesparse
[ 117s] CCOLAMD LDFLAGS:
[ 117s] CCOLAMD libraries: -lccolamd
[ 117s] CHOLMOD CPPFLAGS: -I/usr/include/suitesparse
[ 117s] CHOLMOD LDFLAGS:
[ 117s] CHOLMOD libraries: -lcholmod
[ 117s] COLAMD CPPFLAGS: -I/usr/include/suitesparse
[ 117s] COLAMD LDFLAGS:
[ 117s] COLAMD libraries: -lcolamd
[ 117s] CURL CPPFLAGS:
[ 117s] CURL LDFLAGS:
[ 117s] CURL libraries: -lcurl
[ 117s] CXSPARSE CPPFLAGS: -I/usr/include/suitesparse
[ 117s] CXSPARSE LDFLAGS:
[ 117s] CXSPARSE libraries: -lcxsparse
[ 117s] DL libraries:
[ 117s] FFTW3 CPPFLAGS:
[ 117s] FFTW3 LDFLAGS:
[ 117s] FFTW3 libraries: -lfftw3_threads -lfftw3
[ 117s] FFTW3F CPPFLAGS:
[ 117s] FFTW3F LDFLAGS:
[ 117s] FFTW3F libraries: -lfftw3f_threads -lfftw3f
[ 117s] FLTK CPPFLAGS:
[ 117s] FLTK LDFLAGS: -flto=auto
[ 117s] FLTK libraries: -lfltk_gl -lfltk
[ 117s] fontconfig CPPFLAGS: -I/usr/include/freetype2
[ 117s] fontconfig libraries: -lfontconfig -lfreetype
[ 117s] FreeType2 CPPFLAGS: -I/usr/include/freetype2
[ 117s] FreeType2 libraries: -lfreetype
[ 117s] GLPK CPPFLAGS:
[ 117s] GLPK LDFLAGS:
[ 117s] GLPK libraries: -lglpk
[ 117s] HDF5 CPPFLAGS:
[ 117s] HDF5 LDFLAGS:
[ 117s] HDF5 libraries: -lhdf5
[ 117s] Java home: /usr/lib64/jvm/java-21-openjdk-21
[ 117s] Java JVM path:
/usr/lib64/jvm/java-21-openjdk-21/lib/server
[ 117s] Java CPPFLAGS:
-I/usr/lib64/jvm/java-21-openjdk-21/include
-I/usr/lib64/jvm/java-21-openjdk-21/include/linux
[ 117s] Java libraries:
[ 117s] KLU CPPFLAGS: -I/usr/include/suitesparse
[ 117s] KLU LDFLAGS:
[ 117s] KLU libraries: -lklu
[ 117s] LAPACK libraries:
[ 117s] Magick++ CPPFLAGS: -I/usr/include/GraphicsMagick
[ 117s] Magick++ LDFLAGS:
[ 117s] Magick++ libraries: -lGraphicsMagick++ -lGraphicsMagick
[ 117s] OpenGL libraries: -lGL -lGLU
[ 117s] PCRE CPPFLAGS:
[ 117s] PCRE LDFLAGS:
[ 117s] PCRE libraries: -lpcre2-8
[ 117s] PortAudio CPPFLAGS:
[ 117s] PortAudio LDFLAGS:
[ 117s] PortAudio libraries: -lportaudio -lm -lpthread -lasound
[ 117s] PTHREAD flags: -pthread
[ 117s] PTHREAD libraries: -lpthread
[ 117s] QHULL CPPFLAGS:
[ 117s] QHULL LDFLAGS:
[ 117s] QHULL libraries: -lqhull_r
[ 117s] QRUPDATE CPPFLAGS:
[ 117s] QRUPDATE LDFLAGS:
[ 117s] QRUPDATE libraries: -lqrupdate
[ 117s] Qt CPPFLAGS: -I/usr/include/qt6/QtHelp
-I/usr/include/qt6 -I/usr/include/qt6/QtGui -I/usr/include/qt6/QtSql
-I/usr/include/qt6/QtNetwork -I/usr/include/qt6/QtOpenGL
-I/usr/include/qt6/QtOpenGLWidgets -I/usr/include/qt6/QtPrintSupport
-I/usr/include/qt6/QtWidgets -I/usr/include/qt6/QtXml
-I/usr/include/qt6/QtCore5Compat -I/usr/include/qt6/QtCore
-I/usr/lib64/qt6/mkspecs/linux-g++
[ 117s] Qt LDFLAGS:
[ 117s] Qt GUI libraries: -lQt6Help -lQt6Gui -lQt6Sql
-lQt6Network -lQt6OpenGL -lQt6OpenGLWidgets -lQt6PrintSupport -lQt6Widgets
-lQt6Xml -lQt6Core5Compat -lQt6Core -lqscintilla2_qt6
[ 117s] Qt moc: /usr/libexec/qt6/moc
[ 117s] Qt uic: /usr/libexec/qt6/uic
[ 117s] Qt rcc: /usr/libexec/qt6/rcc
[ 117s] Qt lrelease: /usr/lib64/qt6/bin/lrelease
[ 117s] Qt qcollectiongenerator: /usr/libexec/qt6/qhelpgenerator
[ 117s] Qt qhelpgenerator: /usr/libexec/qt6/qhelpgenerator
[ 117s] READLINE libraries: /usr/lib64/libreadline.so
[ 117s] Sndfile CPPFLAGS: -I/usr/include/opus
[ 117s] Sndfile LDFLAGS:
[ 117s] Sndfile libraries: -lsndfile
[ 117s] SPQR CPPFLAGS: -I/usr/include/suitesparse
[ 117s] SPQR LDFLAGS:
[ 117s] SPQR libraries: -lspqr
[ 117s] SuiteSparse config libraries: -lsuitesparseconfig
[ 117s] SUNDIALS core CPPFLAGS:
[ 117s] SUNDIALS core LDFLAGS:
[ 117s] SUNDIALS core libraries: -lsundials_core
[ 117s] SUNDIALS IDA CPPFLAGS:
[ 117s] SUNDIALS IDA LDFLAGS:
[ 117s] SUNDIALS IDA libraries: -lsundials_ida
[ 117s] SUNDIALS NVECTOR CPPFLAGS:
[ 117s] SUNDIALS NVECTOR LDFLAGS:
[ 117s] SUNDIALS NVECTOR libraries: -lsundials_nvecserial
[ 117s] SUNLINSOL KLU CPPFLAGS:
[ 117s] SUNLINSOL KLU LDFLAGS:
[ 117s] SUNLINSOL KLU libraries: -lsundials_sunlinsolklu
[ 117s] UMFPACK CPPFLAGS: -I/usr/include/suitesparse
[ 117s] UMFPACK LDFLAGS:
[ 117s] UMFPACK libraries: -lumfpack
[ 117s] X11 include flags:
[ 117s] X11 libraries: -lX11
[ 117s] Z CPPFLAGS:
[ 117s] Z LDFLAGS:
[ 117s] Z libraries: -lz
[ 117s]
[ 117s] Default pager: less
[ 117s] gnuplot: gnuplot
[ 117s]
[ 117s] Build Octave Qt GUI: yes (version: 6)
[ 117s] Build Java interface: yes
[ 117s] Build static libraries: no
[ 117s] Build shared libraries: yes
[ 117s] Dynamic Linking API: dlopen
[ 117s] Use library visibility flags: no
[ 117s] 64-bit array dims and indexing: yes
[ 117s] 64-bit BLAS array dims and indexing: no
[ 117s] Use std::pmr::polymorphic_allocator: no
[ 117s] OpenMP SMP multithreading: yes
[ 117s] Truncate intermediate FP results: yes
[ 117s] Include support for GNU readline: yes
[ 117s] Use push parser in command line REPL: yes
[ 117s] Build cross tools: no
[ 117s] Build docs: no
[ 117s] Embed Mercurial ID in libraries: yes
[ 117s] Install build logs: no
[ 117s]
[ 117s] configure: WARNING:
[ 117s]
[ 117s] I didn't find texi2dvi, but it's only a problem if you need to
[ 117s] reconstruct the DVI version of the manual
[ 117s]
[ 117s] configure: WARNING:
[ 117s]
[ 117s] I didn't find icotool, but it's only a problem if you need to
[ 117s] reconstruct octave-logo.ico, which is the case if you're building
from
[ 117s] VCS sources.
[ 117s]
[ 117s] configure: WARNING:
[ 117s]
[ 117s] I didn't find rsvg-convert, but it's only a problem if you need to
[ 117s] reconstruct octave-logo-*.png, which is the case if you're building
[ 117s] from VCS sources.
[ 117s]
[ 117s] configure: WARNING: building documentation disabled; make dist will
fail.
_______________________________________________________
File Attachments:
-------------------------------------------------------
Name: build.log.gz Size: 200KiB
<https://file.savannah.gnu.org/file/build.log.gz?file_id=56152>
AGPL NOTICE
These attachments are served by Savane. You can download the corresponding
source code of Savane at
https://git.savannah.nongnu.org/cgit/administration/savane.git/snapshot/savane-69657d1dd06afa59516e812a90321ed153912484.tar.gz
_______________________________________________________
Reply to this item at:
<https://savannah.gnu.org/bugs/?65866>
_______________________________________________
Message sent via Savannah
https://savannah.gnu.org/
- [Octave-bug-tracker] [bug #65866] make check: Fatal segmentation fault when running image/getframe.m test,
Atri Bhattacharya <=