[Espressomd-maintainer] [espresso] New feature REACTIONS (#41)

[Georg Rempfer]

Pull request contains new feature 'reaction', based on Marcellos implementation 
from march 2011. Problems that existed with this implementation related to 
periodic boundaries and only partial parallelization are fixed. Documentation 
is included.
Also I moved the particle properties from the LANGEVIN_PER_PARTICLE thermostat 
into the proper struct as Axel wanted me to and improved this features 
documentation.

You can merge this Pull Request by running:

  git pull https://github.com/rempferg/espresso reaction

Or you can view, comment on it, or merge it online at:

  https://github.com/espressomd/espresso/pull/41

-- Commit Summary --

* Merge remote branch 'upstream/master'
* Implementation of feature that allows for a balanced reaction that converts 
between two particle types. Also moved the particle properties T and gamma for 
the LANGEVIN_PER_PARTICLE from the particle into the particle_properties struct.
* Merge remote branch 'upstream/master' into reaction
* Added missing checks, cleaned up debug output and wrote documentation.

-- File Changes --

M doc/ug/features.tex (7)
M doc/ug/setup.tex (39)
M src/Makefile.am (2)
M src/communication.c (16)
M src/communication.h (2)
M src/features.def (3)
M src/initialize.c (16)
M src/integrate.c (95)
M src/integrate.h (3)
M src/interaction_data.c (9)
M src/interaction_data.h (4)
M src/particle_data.c (4)
M src/particle_data.h (10)
M src/tcl/initialize_interpreter.c (4)
M src/thermostat.h (14)

-- Patch Links --

  https://github.com/espressomd/espresso/pull/41.patch
  https://github.com/espressomd/espresso/pull/41.diff

--- 
Reply to this email directly or view it on GitHub:
https://github.com/espressomd/espresso/pull/41