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[Espressomd-maintainer] Build failed in Jenkins: master-nightly-mac #54


From: Jenkins Demon
Subject: [Espressomd-maintainer] Build failed in Jenkins: master-nightly-mac #54
Date: Fri, 3 Jul 2015 02:29:43 +0200 (CEST)

See <http://espressomd.org/jenkins/job/master-nightly-mac/54/changes>

Changes:

[phy79182] changed ElectrostaticInteraction, P3M and ELC to cdef classes

[phy79182] added lacking file

[phy79182] added actors.pxd to makefile

[phy79182] further bug fixing

------------------------------------------
[...truncated 318 lines...]
------
Tcl version             = tcl8.6
Tk version              = none

Python
------
python                  = /usr/bin/python -B
build python interface  = 

Other settings
--------------
config                  = myconfig.hpp
installation prefix     = /Users/jenkins/Espresso
number of test tasks    = 4
mympiexec               = 
mpiexec                 = 
pdflatex                = no
makeindex               = no
bibtex                  = no
doxygen                 = no
dot                     = no

CUDA disabled or not supported.
WARNING: MPI disabled or not supported! Parallelization turned off.
Not building Python interface.
END CONFIGURE
~/workspace/workspace/master-nightly-mac
+ maintainer/jenkins/build.sh
  srcdir=<http://espressomd.org/jenkins/job/master-nightly-mac/ws/>
  builddir=<http://espressomd.org/jenkins/job/master-nightly-mac/ws/>
  insource=true
START BUILD
  myconfig=maxset
  build_procs=4
~/workspace/workspace/master-nightly-mac 
~/workspace/workspace/master-nightly-mac
Copying maxset.hpp to 
<http://espressomd.org/jenkins/job/master-nightly-mac/ws/myconfig.hpp...>
>make -j 4
Making all in config
make[1]: Nothing to be done for `all'.
Making all in src
/Applications/Xcode.app/Contents/Developer/usr/bin/make  all-recursive
Making all in core
  GEN      config-features.hpp
  GEN      myconfig-final.hpp <= ../../myconfig.hpp
  GEN      config-features.cpp
/Applications/Xcode.app/Contents/Developer/usr/bin/make  all-am
  CXX      config-features.lo
  CXX      cells.lo
  CXX      collision.lo
  CXX      communication.lo
  CXX      comfixed.lo
  CXX      comforce.lo
  CXX      constraint.lo
  CXX      cuda_interface.lo
  CXX      cuda_init.lo
  CXX      debug.lo
  CXX      domain_decomposition.lo
  CXX      electrokinetics_pdb_parse.lo
  CXX      energy.lo
  CXX      external_potential.lo
  CXX      errorhandling.lo
  CXX      fft.lo
  CXX      fft-common.lo
  CXX      fft-dipolar.lo
  CXX      forcecap.lo
  CXX      forces.lo
  CXX      galilei.lo
  CXX      ghosts.lo
  CXX      global.lo
  CXX      grid.lo
  CXX      halo.lo
  CXX      iccp3m.lo
  CXX      imd.lo
  CXX      initialize.lo
  CXX      integrate.lo
  CXX      interaction_data.lo
  CXX      lattice.lo
  CXX      layered.lo
  CXX      lb.lo
  CXX      lb-boundaries.lo
  CXX      lbgpu.lo
  CXX      lees_edwards.lo
  CXX      lees_edwards_domain_decomposition.lo
  CXX      lees_edwards_comms_manager.lo
  CXX      metadynamics.lo
  CXX      minimize_energy.lo
  CXX      modes.lo
  CXX      molforces.lo
  CXX      mol_cut.lo
  CXX      nemd.lo
  CXX      nsquare.lo
  CXX      particle_data.lo
  CXX      polymer.lo
  CXX      pressure.lo
  CXX      random.lo
  CXX      rattle.lo
  CXX      reaction.lo
  CXX      readpdb.lo
  CXX      rotation.lo
  CXX      RuntimeErrorCollector.lo
  CXX      specfunc.lo
  CXX      statistics.lo
  CXX      statistics_chain.lo
  CXX      statistics_cluster.lo
  CXX      statistics_correlation.lo
  CXX      statistics_fluid.lo
  CXX      statistics_molecule.lo
  CXX      statistics_observable.lo
  CXX      statistics_wallstuff.lo
  CXX      thermostat.lo
  CXX      topology.lo
  CXX      tuning.lo
  CXX      uwerr.lo
  CXX      verlet.lo
  CXX      virtual_sites.lo
  CXX      virtual_sites_com.lo
  CXX      virtual_sites_relative.lo
  CXX      vmdsock.lo
  CXX      ghmc.lo
  CXX      integrate_sd.lo
  CXX      EspressoSystemInterface.lo
  CXX      PdbParser.lo
  CXX      bmhtf-nacl.lo
  CXX      buckingham.lo
  CXX      cos2.lo
  CXX      dpd.lo
  CXX      gaussian.lo
  CXX      gb.lo
  CXX      hat.lo
  CXX      hertzian.lo
  CXX      lj.lo
  CXX      ljangle.lo
  CXX      ljcos.lo
  CXX      ljcos2.lo
  CXX      ljgen.lo
  CXX      morse.lo
  CXX      soft_sphere.lo
  CXX      steppot.lo
  CXX      tab.lo
  CXX      tunable_slip.lo
  CXX      angle.lo
  CXX      angle_harmonic.lo
  CXX      angle_cosine.lo
  CXX      angle_cossquare.lo
  CXX      angledist.lo
  CXX      dihedral.lo
  CXX      endangledist.lo
  CXX      fene.lo
  CXX      harmonic_dumbbell.lo
  CXX      harmonic.lo
  CXX      quartic.lo
  CXX      overlap.lo
  CXX      umbrella.lo
  CXX      bonded_coulomb.lo
  CXX      subt_lj.lo
  CXX      hydrogen_bond.lo
  CXX      twist_stack.lo
  CXX      debye_hueckel.lo
  CXX      elc.lo
  CXX      magnetic_non_p3m_methods.lo
  CXX      mdlc_correction.lo
  CXX      maggs.lo
  CXX      mmm1d.lo
  CXX      mmm2d.lo
  CXX      mmm-common.lo
  CXX      p3m.lo
  CXX      p3m-common.lo
  CXX      p3m-dipolar.lo
  CXX      reaction_field.lo
  GEN      config-version.cpp
  CXX      object-in-fluid/area_force_local.lo
  CXX      object-in-fluid/area_force_global.lo
  CXX      object-in-fluid/bending_force.lo
  CXX      object-in-fluid/stretching_force.lo
  CXX      object-in-fluid/stretchlin_force.lo
  CXX      object-in-fluid/volume_force.lo
  CXX      immersed_boundary/ibm_main.lo
  CXX      immersed_boundary/ibm_triel.lo
  CXX      immersed_boundary/ibm_volume_conservation.lo
  CXX      immersed_boundary/ibm_tribend.lo
  CXX      immersed_boundary/ibm_cuda_interface.lo
  CXX      actor/ActorList.lo
  CXX      actor/HarmonicWell.lo
  CXX      actor/HarmonicOrientationWell.lo
  CXX      actor/Mmm1dgpuForce.lo
  CXX      actor/EwaldgpuForce.lo
  CXX      config-version.lo
  CXX      mpifake/mpi.lo
  CXXLD    libEspresso.la
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
 file: .libs/libEspresso.a(cuda_interface.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
 file: .libs/libEspresso.a(cuda_init.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
 file: .libs/libEspresso.a(electrokinetics_pdb_parse.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
 file: .libs/libEspresso.a(lbgpu.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
 file: .libs/libEspresso.a(lees_edwards_domain_decomposition.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
 file: .libs/libEspresso.a(lees_edwards_comms_manager.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
 file: .libs/libEspresso.a(metadynamics.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
 file: .libs/libEspresso.a(mol_cut.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
 file: .libs/libEspresso.a(virtual_sites_com.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
 file: .libs/libEspresso.a(cos2.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
 file: .libs/libEspresso.a(tunable_slip.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
 file: .libs/libEspresso.a(angle.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
 file: .libs/libEspresso.a(umbrella.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
 file: .libs/libEspresso.a(ibm_main.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
 file: .libs/libEspresso.a(ibm_triel.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
 file: .libs/libEspresso.a(ibm_volume_conservation.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
 file: .libs/libEspresso.a(ibm_tribend.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
 file: .libs/libEspresso.a(ibm_cuda_interface.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
 file: .libs/libEspresso.a(HarmonicWell.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
 file: .libs/libEspresso.a(Mmm1dgpuForce.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
 file: .libs/libEspresso.a(EwaldgpuForce.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
 file: .libs/libEspresso.a(cuda_interface.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
 file: .libs/libEspresso.a(cuda_init.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
 file: .libs/libEspresso.a(electrokinetics_pdb_parse.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
 file: .libs/libEspresso.a(lbgpu.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
 file: .libs/libEspresso.a(lees_edwards_domain_decomposition.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
 file: .libs/libEspresso.a(lees_edwards_comms_manager.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
 file: .libs/libEspresso.a(metadynamics.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
 file: .libs/libEspresso.a(mol_cut.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
 file: .libs/libEspresso.a(virtual_sites_com.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
 file: .libs/libEspresso.a(cos2.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
 file: .libs/libEspresso.a(tunable_slip.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
 file: .libs/libEspresso.a(angle.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
 file: .libs/libEspresso.a(umbrella.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
 file: .libs/libEspresso.a(ibm_main.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
 file: .libs/libEspresso.a(ibm_triel.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
 file: .libs/libEspresso.a(ibm_volume_conservation.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
 file: .libs/libEspresso.a(ibm_tribend.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
 file: .libs/libEspresso.a(ibm_cuda_interface.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
 file: .libs/libEspresso.a(HarmonicWell.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
 file: .libs/libEspresso.a(Mmm1dgpuForce.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
 file: .libs/libEspresso.a(EwaldgpuForce.o) has no symbols
Making all in tcl
  CXX      bin_tcl.lo
  CXX      binary_file_tcl.lo
  CXX      blockfile_tcl.lo
  CXX      h5mdfile_tcl.lo
h5mdfile_tcl.cpp:8:10: fatal error: 'hdf5.h' file not found
#include "hdf5.h"
         ^
1 error generated.
make[3]: *** [h5mdfile_tcl.lo] Error 1
make[3]: *** Waiting for unfinished jobs....
make[2]: *** [all-recursive] Error 1
make[1]: *** [all] Error 2
make: *** [all-recursive] Error 1
+ exit 1
Build step 'Execute shell' marked build as failure
[WARNINGS] Skipping publisher since build result is FAILURE
Archiving artifacts



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