[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]
15/17: gnu: Add r-pcamethods.
From: |
Ricardo Wurmus |
Subject: |
15/17: gnu: Add r-pcamethods. |
Date: |
Tue, 17 Jan 2017 20:47:21 +0000 (UTC) |
rekado pushed a commit to branch master
in repository guix.
commit 6a67e181ac5fcf0fc19a5b4a247e1680e112d3ca
Author: Ricardo Wurmus <address@hidden>
Date: Mon Jan 16 12:21:05 2017 +0100
gnu: Add r-pcamethods.
* gnu/packages/bioinformatics.scm (r-pcamethods): New variable.
---
gnu/packages/bioinformatics.scm | 29 +++++++++++++++++++++++++++++
1 file changed, 29 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 4952bbe..bc7b0be 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8393,3 +8393,32 @@ XML package. The parser tries to be general and able to
handle all types of
mzIdentML files with the drawback of having less pretty output than a vendor
specific parser.")
(license license:gpl2+)))
+
+(define-public r-pcamethods
+ (package
+ (name "r-pcamethods")
+ (version "1.66.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "pcaMethods" version))
+ (sha256
+ (base32
+ "18mawhxw57pgpn87qha4mwki24gqja7wpqha8q496476vyap11xw"))))
+ (properties `((upstream-name . "pcaMethods")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biobase" ,r-biobase)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-rcpp" ,r-rcpp)))
+ (home-page "https://github.com/hredestig/pcamethods")
+ (synopsis "Collection of PCA methods")
+ (description
+ "This package provides Bayesian PCA, Probabilistic PCA, Nipals PCA,
+Inverse Non-Linear PCA and the conventional SVD PCA. A cluster based method
+for missing value estimation is included for comparison. BPCA, PPCA and
+NipalsPCA may be used to perform PCA on incomplete data as well as for
+accurate missing value estimation. A set of methods for printing and plotting
+the results is also provided. All PCA methods make use of the same data
+structure (pcaRes) to provide a common interface to the PCA results.")
+ (license license:gpl3+)))
- branch master updated (46076d0 -> 66da3a9), Ricardo Wurmus, 2017/01/17
- 02/17: gnu: Add r-fivethirtyeight., Ricardo Wurmus, 2017/01/17
- 08/17: gnu: Add r-maldiquant., Ricardo Wurmus, 2017/01/17
- 05/17: gnu: Add r-compquadform., Ricardo Wurmus, 2017/01/17
- 16/17: gnu: Add r-msnbase., Ricardo Wurmus, 2017/01/17
- 14/17: gnu: Add r-mzid., Ricardo Wurmus, 2017/01/17
- 04/17: gnu: Add ribodiff., Ricardo Wurmus, 2017/01/17
- 01/17: gnu: powertabeditor: Update to 2.0.0-alpha9., Ricardo Wurmus, 2017/01/17
- 03/17: gnu: Add hisat2., Ricardo Wurmus, 2017/01/17
- 07/17: gnu: Add r-raremetals2., Ricardo Wurmus, 2017/01/17
- 15/17: gnu: Add r-pcamethods.,
Ricardo Wurmus <=
- 12/17: gnu: Add r-affy., Ricardo Wurmus, 2017/01/17
- 11/17: gnu: Add r-affyio., Ricardo Wurmus, 2017/01/17
- 10/17: gnu: Add r-mzr., Ricardo Wurmus, 2017/01/17
- 06/17: gnu: Add r-seqminer., Ricardo Wurmus, 2017/01/17
- 09/17: gnu: Add r-protgenerics., Ricardo Wurmus, 2017/01/17
- 17/17: gnu: Add r-msnid., Ricardo Wurmus, 2017/01/17
- 13/17: gnu: Add r-vsn., Ricardo Wurmus, 2017/01/17