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10/17: gnu: Add r-mzr.
From: |
Ricardo Wurmus |
Subject: |
10/17: gnu: Add r-mzr. |
Date: |
Tue, 17 Jan 2017 20:47:21 +0000 (UTC) |
rekado pushed a commit to branch master
in repository guix.
commit 71676a1f4c8d14239936c07113c5cd2a37770aa0
Author: Ricardo Wurmus <address@hidden>
Date: Mon Jan 16 12:18:12 2017 +0100
gnu: Add r-mzr.
* gnu/packages/bioinformatics.scm (r-mzr): New variable.
---
gnu/packages/bioinformatics.scm | 32 ++++++++++++++++++++++++++++++++
1 file changed, 32 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 4a1bd01..5166002 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8248,3 +8248,35 @@ as allowing spectra with different resolutions.")
"This package provides S4 generic functions needed by Bioconductor
proteomics packages.")
(license license:artistic2.0)))
+
+(define-public r-mzr
+ (package
+ (name "r-mzr")
+ (version "2.8.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "mzR" version))
+ (sha256
+ (base32
+ "0ipmhg6l3pf648rdx5g2ha7l5ppd3cja6afxhdw76x8ga3633x0r"))))
+ (properties `((upstream-name . "mzR")))
+ (build-system r-build-system)
+ (inputs
+ `(("netcdf" ,netcdf)))
+ (propagated-inputs
+ `(("r-biobase" ,r-biobase)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-protgenerics" ,r-protgenerics)
+ ("r-rcpp" ,r-rcpp)
+ ("r-zlibbioc" ,r-zlibbioc)))
+ (home-page "https://github.com/sneumann/mzR/")
+ (synopsis "Parser for mass spectrometry data files")
+ (description
+ "The mzR package provides a unified API to the common file formats and
+parsers available for mass spectrometry data. It comes with a wrapper for the
+ISB random access parser for mass spectrometry mzXML, mzData and mzML files.
+The package contains the original code written by the ISB, and a subset of the
+proteowizard library for mzML and mzIdentML. The netCDF reading code has
+previously been used in XCMS.")
+ (license license:artistic2.0)))
- 05/17: gnu: Add r-compquadform., (continued)
- 05/17: gnu: Add r-compquadform., Ricardo Wurmus, 2017/01/17
- 16/17: gnu: Add r-msnbase., Ricardo Wurmus, 2017/01/17
- 14/17: gnu: Add r-mzid., Ricardo Wurmus, 2017/01/17
- 04/17: gnu: Add ribodiff., Ricardo Wurmus, 2017/01/17
- 01/17: gnu: powertabeditor: Update to 2.0.0-alpha9., Ricardo Wurmus, 2017/01/17
- 03/17: gnu: Add hisat2., Ricardo Wurmus, 2017/01/17
- 07/17: gnu: Add r-raremetals2., Ricardo Wurmus, 2017/01/17
- 15/17: gnu: Add r-pcamethods., Ricardo Wurmus, 2017/01/17
- 12/17: gnu: Add r-affy., Ricardo Wurmus, 2017/01/17
- 11/17: gnu: Add r-affyio., Ricardo Wurmus, 2017/01/17
- 10/17: gnu: Add r-mzr.,
Ricardo Wurmus <=
- 06/17: gnu: Add r-seqminer., Ricardo Wurmus, 2017/01/17
- 09/17: gnu: Add r-protgenerics., Ricardo Wurmus, 2017/01/17
- 17/17: gnu: Add r-msnid., Ricardo Wurmus, 2017/01/17
- 13/17: gnu: Add r-vsn., Ricardo Wurmus, 2017/01/17