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04/15: gnu: methyldackel: Update to 0.6.1.
From: |
guix-commits |
Subject: |
04/15: gnu: methyldackel: Update to 0.6.1. |
Date: |
Fri, 12 May 2023 17:25:43 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit 7da3ca1bd70a9013c436a7e97eabe21d06d081fa
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Fri May 12 22:27:17 2023 +0200
gnu: methyldackel: Update to 0.6.1.
* gnu/packages/bioinformatics.scm (methyldackel): Update to 0.6.1.
[arguments]: Set LIBBIGWIG variable instead of patching Makefile.
[inputs]: Replace htslib-1.9 with htslib.
---
gnu/packages/bioinformatics.scm | 9 ++++-----
1 file changed, 4 insertions(+), 5 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index c798cc5e72..68ba0b15fa 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -17844,7 +17844,7 @@ patterns.")
(define-public methyldackel
(package
(name "methyldackel")
- (version "0.5.1")
+ (version "0.6.1")
(source (origin
(method git-fetch)
(uri (git-reference
@@ -17853,7 +17853,7 @@ patterns.")
(file-name (git-file-name name version))
(sha256
(base32
- "1sfhf2ap75qxpnmy1ifgmxqs18rq8mah9mcgkby73vc6h0sw99ws"))))
+ "06kj76pyhzxfcjcpm840a3km3fa9994kfq4asglnb228pwak326z"))))
(build-system gnu-build-system)
(arguments
(list
@@ -17861,18 +17861,17 @@ patterns.")
#:make-flags
#~(list "CC=gcc"
"CFLAGS=-fcommon"
+ "LIBBIGWIG=-lBigWig"
(string-append "prefix=" #$output "/bin/"))
#:phases
'(modify-phases %standard-phases
(replace 'configure
(lambda _
(substitute* "Makefile"
- (("-lhts ") "-lhts -lBigWig ")
(("install MethylDackel \\$\\(prefix\\)" match)
(string-append "install -d $(prefix); " match))))))))
(inputs
- (list curl ; XXX: needed by libbigwig
- htslib-1.9 libbigwig zlib))
+ (list curl htslib libbigwig zlib))
;; Needed for tests
(native-inputs
(list python-wrapper))
- branch master updated (0e20ed322d -> d67a3622ef), guix-commits, 2023/05/12
- 01/15: gnu: ribotaper: Simplify with G-expression., guix-commits, 2023/05/12
- 03/15: gnu: methyldackel: Simplify arguments., guix-commits, 2023/05/12
- 02/15: gnu: phast: Simplify by using G-expression., guix-commits, 2023/05/12
- 06/15: gnu: samblaster: Update to 0.1.26., guix-commits, 2023/05/12
- 04/15: gnu: methyldackel: Update to 0.6.1.,
guix-commits <=
- 07/15: gnu: multichoose: Clean up., guix-commits, 2023/05/12
- 08/15: gnu: arriba: Use SEARCH-INPUT-FILE and -DIRECTORY., guix-commits, 2023/05/12
- 11/15: gnu: python-seaborn: Simplify by using pyproject-build-system., guix-commits, 2023/05/12
- 12/15: gnu: python-pyproject-metadata: Simplify by using pyproject-build-system., guix-commits, 2023/05/12
- 14/15: gnu: python-orjson: Reuse phases from pyproject-build-system., guix-commits, 2023/05/12
- 09/15: gnu: jamm: Use G-expression., guix-commits, 2023/05/12
- 10/15: gnu: shrinkwrap: Use pyproject-build-system., guix-commits, 2023/05/12
- 15/15: gnu: python-orjson: Fix version string of Python module., guix-commits, 2023/05/12
- 05/15: gnu: samblaster: Simplify., guix-commits, 2023/05/12
- 13/15: gnu: python-canonicaljson: Use pyproject-build-system., guix-commits, 2023/05/12