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09/11: gnu: Add r-piano.
From: |
guix-commits |
Subject: |
09/11: gnu: Add r-piano. |
Date: |
Tue, 31 Oct 2023 08:59:05 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit e8cd556a7c7a0ff0d5619bbad3680da2ac53c1e1
Author: Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
AuthorDate: Tue Oct 31 11:57:27 2023 +0100
gnu: Add r-piano.
* gnu/packages/bioconductor.scm (r-piano): New variable.
Change-Id: I1bc2387563510c47614748423a3b510adc0486aa
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
---
gnu/packages/bioconductor.scm | 37 +++++++++++++++++++++++++++++++++++++
1 file changed, 37 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index ffac75edcd..9663ebca35 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -9109,6 +9109,43 @@ isotypes. This R package enables the identification and
classification of such
domain isotypes from pfam data.")
(license license:expat)))
+(define-public r-piano
+ (package
+ (name "r-piano")
+ (version "2.16.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "piano" version))
+ (sha256
+ (base32 "0rm9afgq4n7yinmx09b0xd17wgzhbswm80vcjmmwxr6fv1741xfy"))))
+ (properties `((upstream-name . "piano")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-biobase
+ r-biocgenerics
+ r-dt
+ r-fgsea
+ r-gplots
+ r-htmlwidgets
+ r-igraph
+ r-marray
+ r-relations
+ r-scales
+ r-shiny
+ r-shinydashboard
+ r-shinyjs
+ r-visnetwork))
+ (native-inputs (list r-knitr))
+ (home-page "https://varemo.github.io/piano/")
+ (synopsis "Platform for integrative analysis of omics data")
+ (description
+ "Piano performs gene set analysis using various statistical methods, from
+different gene level statistics and a wide range of gene-set collections. The
+package contains functions for combining the results of multiple runs of gene
+set analyses.")
+ (license license:gpl2+)))
+
;; This is a CRAN package, but it depends on a Bioconductor package:
;; r-aroma-light, r-dnacopy..
(define-public r-pscbs
- branch master updated (c0895371c5 -> a0a377fdd6), guix-commits, 2023/10/31
- 01/11: gnu: Add r-r3cseq., guix-commits, 2023/10/31
- 03/11: gnu: Add r-nistunits., guix-commits, 2023/10/31
- 02/11: gnu: Add r-r4rna., guix-commits, 2023/10/31
- 04/11: gnu: Add r-celestial., guix-commits, 2023/10/31
- 06/11: gnu: Add r-relations., guix-commits, 2023/10/31
- 08/11: gnu: Add r-bench., guix-commits, 2023/10/31
- 09/11: gnu: Add r-piano.,
guix-commits <=
- 07/11: gnu: Add r-profmem., guix-commits, 2023/10/31
- 05/11: gnu: Add r-magicaxis., guix-commits, 2023/10/31
- 10/11: gnu: Add r-coregx., guix-commits, 2023/10/31
- 11/11: gnu: Add r-radiogx., guix-commits, 2023/10/31