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10/11: gnu: Add r-coregx.
From: |
guix-commits |
Subject: |
10/11: gnu: Add r-coregx. |
Date: |
Tue, 31 Oct 2023 08:59:07 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit 7170720e482de2415e779595733c7fbfa969bb33
Author: Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
AuthorDate: Tue Oct 31 11:57:28 2023 +0100
gnu: Add r-coregx.
* gnu/packages/bioconductor.scm (r-coregx): New variable.
Change-Id: Ib54ba3c7bebdcc90748d4e4b0b2ce63b7f0fc1b8
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
---
gnu/packages/bioconductor.scm | 45 +++++++++++++++++++++++++++++++++++++++++++
1 file changed, 45 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 9663ebca35..fc216a4573 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -4422,6 +4422,51 @@ omics protocols. The package can also be used to
explore functional pathways
enrichment in single cell data.")
(license license:gpl3)))
+(define-public r-coregx
+ (package
+ (name "r-coregx")
+ (version "2.4.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "CoreGx" version))
+ (sha256
+ (base32 "09pv117g8sxhrij960mparrz1r9vx8s20gmpvn1h667kl1bc0jm9"))))
+ (properties `((upstream-name . "CoreGx")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-bench
+ r-biobase
+ r-biocgenerics
+ r-biocparallel
+ r-bumpymatrix
+ r-checkmate
+ r-crayon
+ r-data-table
+ r-glue
+ r-lsa
+ r-matrixgenerics
+ r-multiassayexperiment
+ r-piano
+ r-rlang
+ r-s4vectors
+ r-summarizedexperiment))
+ (native-inputs (list r-knitr))
+ (home-page "https://bioconductor.org/packages/CoreGx")
+ (synopsis
+ "Classes and functions to serve as the basis for other Gx packages")
+ (description
+ "This package provides a collection of functions and classes which serve
+as the foundation for packages such as PharmacoGx and RadioGx. It was created
+to abstract shared functionality to increase ease of maintainability and
+reduce code repetition in current and future Gx suite programs. Major
+features include a @code{CoreSet} class, from which RadioSet and PharmacoSet
+are derived, along with get and set methods for each respective slot.
+Additional functions related to fitting and plotting dose response curves,
+quantifying statistical correlation and calculating @acronym{AUC, area under
+the curve} or @acronym{SF, survival fraction} are included.")
+ (license license:gpl3+)))
+
(define-public r-coverageview
(package
(name "r-coverageview")
- branch master updated (c0895371c5 -> a0a377fdd6), guix-commits, 2023/10/31
- 01/11: gnu: Add r-r3cseq., guix-commits, 2023/10/31
- 03/11: gnu: Add r-nistunits., guix-commits, 2023/10/31
- 02/11: gnu: Add r-r4rna., guix-commits, 2023/10/31
- 04/11: gnu: Add r-celestial., guix-commits, 2023/10/31
- 06/11: gnu: Add r-relations., guix-commits, 2023/10/31
- 08/11: gnu: Add r-bench., guix-commits, 2023/10/31
- 09/11: gnu: Add r-piano., guix-commits, 2023/10/31
- 07/11: gnu: Add r-profmem., guix-commits, 2023/10/31
- 05/11: gnu: Add r-magicaxis., guix-commits, 2023/10/31
- 10/11: gnu: Add r-coregx.,
guix-commits <=
- 11/11: gnu: Add r-radiogx., guix-commits, 2023/10/31