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05/05: gnu: Add r-screpertoire.
From: |
guix-commits |
Subject: |
05/05: gnu: Add r-screpertoire. |
Date: |
Sat, 4 Nov 2023 18:14:30 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit adf716c1718408a3a681f5c73ff5aab59a6da44d
Author: Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
AuthorDate: Fri Nov 3 17:30:04 2023 +0100
gnu: Add r-screpertoire.
* gnu/packages/bioconductor.scm (r-screpertoire): New variable.
Change-Id: Iaa876f787d5e39ca2888bf2082da3d7839224e15
---
gnu/packages/bioconductor.scm | 43 +++++++++++++++++++++++++++++++++++++++++++
1 file changed, 43 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 6a249bcd50..754ba98afc 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -10291,6 +10291,49 @@ a scRNA-seq experiment onto the cell-types or
individual cells identified in a
different experiment.")
(license license:gpl3)))
+(define-public r-screpertoire
+ (package
+ (name "r-screpertoire")
+ (version "1.12.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "scRepertoire" version))
+ (sha256
+ (base32 "1wgs8dv5zl82iciy86w5ws1gq8v2piklcifbw7gmbw60kijyr2l1"))))
+ (properties `((upstream-name . "scRepertoire")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-doparallel
+ r-dplyr
+ r-ggalluvial
+ r-ggplot2
+ r-ggraph
+ r-igraph
+ r-plyr
+ r-powertcr
+ r-reshape2
+ r-rlang
+ r-seuratobject
+ r-singlecellexperiment
+ r-stringdist
+ r-stringr
+ r-summarizedexperiment
+ r-tidygraph
+ r-vegan))
+ (native-inputs (list r-knitr))
+ (home-page "https://bioconductor.org/packages/scRepertoire")
+ (synopsis "Toolkit for single-cell immune receptor profiling")
+ (description
+ "The scRepertoire package was built to process data derived from the 10x
+Genomics Chromium Immune Profiling for both @acronym{TCR, T-cell receptor} and
+@acronym{Ig, immunoglobulin} enrichment workflows and subsequently interacts
with
+the popular Seurat and SingleCellExperiment R packages. It also allows for
+general analysis of single-cell clonotype information without the use of
+expression information. The package functions as a wrapper for Startrac and
+powerTCR R packages.")
+ (license license:gpl2)))
+
(define-public r-scry
(package
(name "r-scry")