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03/03: gnu: Add r-projectils.
From: |
guix-commits |
Subject: |
03/03: gnu: Add r-projectils. |
Date: |
Tue, 2 Jan 2024 04:21:32 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit 404c4a5abac34c2a645e1af9a60c8899bd790ed9
Author: Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
AuthorDate: Wed Dec 27 11:02:36 2023 +0100
gnu: Add r-projectils.
* gnu/packages/bioinformatics.scm (r-projectils): New variable.
Change-Id: Ia975cfcb9c79e59b029c6839dc87b5dcb89bf72a
---
gnu/packages/bioinformatics.scm | 45 +++++++++++++++++++++++++++++++++++++++++
1 file changed, 45 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 34039b2eb5..56219c55a5 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -10349,6 +10349,51 @@ data. This package includes panel editing or renaming
for FCS files,
bead-based normalization and debarcoding.")
(license license:gpl3))))
+(define-public r-projectils
+ (let ((commit "cc73b97471b4b6eea11ce779b5c4a7dc5c3e1709")
+ (revision "1"))
+ (package
+ (name "r-projectils")
+ (version (git-version "3.0.0" revision commit))
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/carmonalab/ProjecTILs")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "0dpzvbhhb9andnj7angpj32cgkwd6rs6qgpl6i21pqzcn6vqqhqw"))))
+ (properties `((upstream-name . "ProjecTILs")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-biocneighbors
+ r-biocparallel
+ r-dplyr
+ r-ggplot2
+ r-matrix
+ r-patchwork
+ r-pheatmap
+ r-pracma
+ r-purrr
+ r-rcolorbrewer
+ r-reshape2
+ r-scales
+ r-scgate
+ r-seurat
+ r-seuratobject
+ r-stacas
+ r-ucell
+ r-umap
+ r-uwot))
+ (home-page "https://github.com/carmonalab/ProjecTILs")
+ (synopsis "Reference-based analysis of scRNA-seq data")
+ (description
+ "This package implements methods to project single-cell RNA-seq data
+onto a reference atlas, enabling interpretation of unknown cell transcriptomic
+states in the the context of known, reference states.")
+ (license license:gpl3))))
+
(define-public r-presto
(let ((commit "052085db9c88aa70a28d11cc58ebc807999bf0ad")
(revision "0"))