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01/06: gnu: Add python-parabam.
From: |
guix-commits |
Subject: |
01/06: gnu: Add python-parabam. |
Date: |
Wed, 10 Jan 2024 12:40:10 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit 16a277e0a9a2dba0dc6c63c5f9df1adff7c88371
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Sat Jan 6 14:53:42 2024 +0100
gnu: Add python-parabam.
* gnu/packages/bioinformatics.scm (python-parabam): New variable.
Change-Id: I66ccf5fd0647f908f1cefd38f0d92e589a81683b
---
gnu/packages/bioinformatics.scm | 23 +++++++++++++++++++++++
1 file changed, 23 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 7dbebcf3da..04af72bc95 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -2110,6 +2110,29 @@ matplotlib Axes objects, making them easy to style and
incorporate into
multi-panel figures.")
(license license:expat)))
+(define-public python-parabam
+ (package
+ (name "python-parabam")
+ (version "3.0.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "parabam" version))
+ (sha256
+ (base32 "1cy9q3gzdawi1kilycpd7waymjmrwsg8czwycfp13g301ir9xyp3"))
+ (modules '((guix build utils)))
+ (snippet
+ '(substitute* "setup.py"
+ (("'argparse',") "")))))
+ (build-system pyproject-build-system)
+ (propagated-inputs (list python-numpy python-pysam))
+ (home-page "https://github.com/cancerit/parabam")
+ (synopsis "Parallel BAM File Analysis")
+ (description "Parabam is a tool for processing sequencing files in
+parallel. It uses Python's native multiprocessing framework to apply a user
+defined rule on an input file.")
+ (license license:gpl3)))
+
(define-public python-peaks2utr
(package
(name "python-peaks2utr")
- branch master updated (5c0f77f424 -> c1fda6cf61), guix-commits, 2024/01/10
- 01/06: gnu: Add python-parabam.,
guix-commits <=
- 02/06: gnu: Add python-telomerecat., guix-commits, 2024/01/10
- 03/06: gnu: Add r-escape., guix-commits, 2024/01/10
- 06/06: gnu: Add r-jaspar2020., guix-commits, 2024/01/10
- 05/06: gnu: Add r-dsb., guix-commits, 2024/01/10
- 04/06: gnu: r-signac: Update to 1.12.0-1.8ecdde2., guix-commits, 2024/01/10