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32/55: gnu: python-plastid: Update to 0.6.1.
From: |
guix-commits |
Subject: |
32/55: gnu: python-plastid: Update to 0.6.1. |
Date: |
Mon, 15 Jan 2024 07:42:24 -0500 (EST) |
rekado pushed a commit to branch wip-python-science
in repository guix.
commit f47bbb56ff45e18b1964d7d7d41fdb2306cdaaf8
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Tue Jan 9 14:01:14 2024 +0100
gnu: python-plastid: Update to 0.6.1.
* gnu/packages/bioinformatics.scm (python-plastid): Update to 0.6.1.
[arguments]: Disable four tests.
Change-Id: If0225f226e702e89d451e2955d0f76691a8816c0
---
gnu/packages/bioinformatics.scm | 14 +++++++++++---
1 file changed, 11 insertions(+), 3 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 8ae2b249a9..5d0c53d45e 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -4014,19 +4014,27 @@ UCSC genome browser.")
(define-public python-plastid
(package
(name "python-plastid")
- (version "0.6.0")
+ (version "0.6.1")
(source (origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/joshuagryphon/plastid")
- (commit (string-append "v" version))))
+ (commit "d97f239d73b3a7c2eff46f71928b777431891f90")))
(file-name (git-file-name name version))
(sha256
(base32
- "1ka9j08j6i105l89w8b7sg0l8lm3lcrxzy4cjl5dp4cxdmycap62"))))
+ "0iccpywlpf1ws46279z9rl0l29pil0rj0g2j5nvqq7jfbnq581cf"))))
(build-system pyproject-build-system)
(arguments
(list
+ #:test-flags
+ '(list "plastid/test"
+ ;; These four failures look like errors in the test wrapper
+ ;; class.
+ "-k" (string-append "not test_chrom_sizes"
+ " and not test_no_crash_if_file_not_exist"
+ " and not test_fiveprime_variable"
+ " and not test_fiveprime_variable_from_file"))
#:phases
#~(modify-phases %standard-phases
(add-after 'unpack 'unpack-test-data
- 20/55: gnu: python-matplotlib: Update to 3.8.2., (continued)
- 20/55: gnu: python-matplotlib: Update to 3.8.2., guix-commits, 2024/01/15
- 21/55: gnu: python-seaborn: Update to 0.13.1., guix-commits, 2024/01/15
- 13/55: gnu: python-matplotx: Disable test_png test., guix-commits, 2024/01/15
- 16/55: gnu: python-umap-learn: Update to 0.5.5., guix-commits, 2024/01/15
- 22/55: gnu: Add python-pytest-nunit., guix-commits, 2024/01/15
- 23/55: gnu: python-scanpy: Update to 1.9.6., guix-commits, 2024/01/15
- 28/55: gnu: python-pyani: Disable tests., guix-commits, 2024/01/15
- 25/55: gnu: python-poliastro: Make compatible with latest matplotlib., guix-commits, 2024/01/15
- 29/55: gnu: python-pegasusio: Disable tests., guix-commits, 2024/01/15
- 30/55: gnu: python-reportlab: Update to 4.0.8., guix-commits, 2024/01/15
- 32/55: gnu: python-plastid: Update to 0.6.1.,
guix-commits <=
- 35/55: gnu: python-demuxem: Disable tests., guix-commits, 2024/01/15
- 38/55: gnu: python-fit-nbinom: Disable tests., guix-commits, 2024/01/15
- 36/55: gnu: python-cartopy: Update to 0.22.0., guix-commits, 2024/01/15
- 42/55: gnu: python-pint: Add missing input., guix-commits, 2024/01/15
- 08/55: gnu: python-tifffile: Update to 2023.12.9., guix-commits, 2024/01/15
- 15/55: gnu: python-pynndescent: Update to 0.5.11., guix-commits, 2024/01/15
- 24/55: gnu: python-cleanlab: Disable test_aux_inputs, enable other tests., guix-commits, 2024/01/15
- 12/55: gnu: python-pypng: Update to 0.20220715.0., guix-commits, 2024/01/15
- 31/55: gnu: cnvkit: Update to 0.9.10., guix-commits, 2024/01/15
- 33/55: gnu: python-cooler: Update to 0.9.1., guix-commits, 2024/01/15