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branch master updated: gnu: Add randfold.
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guix-commits |
Subject: |
branch master updated: gnu: Add randfold. |
Date: |
Tue, 23 Jan 2024 15:32:47 -0500 |
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rekado pushed a commit to branch master
in repository guix.
The following commit(s) were added to refs/heads/master by this push:
new 25f0964c3e gnu: Add randfold.
25f0964c3e is described below
commit 25f0964c3ece4599787c59638a42ad9190a4da49
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Tue Jan 23 21:30:16 2024 +0100
gnu: Add randfold.
* gnu/packages/bioinformatics.scm (randfold): New variable.
Change-Id: If2cea9c8d5323296015dc21ea7a3d1b677ae2798
---
gnu/packages/bioinformatics.scm | 33 +++++++++++++++++++++++++++++++++
1 file changed, 33 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 5e30cf1ec7..fac29cfa98 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -1507,6 +1507,39 @@ cpp.find_library('hdf5_cpp', dirs : '~a'), "
"Blasr is a genomic sequence aligner for processing PacBio long reads.")
(license license:bsd-3)))
+(define-public randfold
+ (package
+ (name "randfold")
+ (version "2.0.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "http://bioinformatics.psb.ugent.be/"
+ "supplementary_data/erbon/nov2003/downloads/"
+ "randfold-" version ".tar.gz"))
+ (sha256
+ (base32
+ "0gqixl4ncaibrxmn25d6lm2hrw4ml2fj13nrc9q1kilsxdfi91mj"))))
+ (build-system gnu-build-system)
+ (arguments
+ (list
+ #:tests? #f ;no tests provided
+ #:phases
+ #~(modify-phases %standard-phases
+ (delete 'configure)
+ (replace 'install
+ (lambda _
+ (install-file "randfold"
+ (string-append #$output "/bin")))))))
+ (inputs (list eddylab-squid))
+ (home-page
+ "http://bioinformatics.psb.ugent.be/supplementary_data/erbon/nov2003/")
+ (synopsis "Minimum free energy of folding randomization test software")
+ (description "randfold computes the probability that, for a given
+sequence, the @dfn{Minimum Free Energy} (MFE) of the secondary structure is
+different from MFE computed with random sequences.")
+ (license license:gpl2)))
+
(define-public ribotaper
(package
(name "ribotaper")
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