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branch master updated: gnu: Add metal.
From: |
guix-commits |
Subject: |
branch master updated: gnu: Add metal. |
Date: |
Tue, 23 Jan 2024 15:42:19 -0500 |
This is an automated email from the git hooks/post-receive script.
rekado pushed a commit to branch master
in repository guix.
The following commit(s) were added to refs/heads/master by this push:
new b9a5c50d8c gnu: Add metal.
b9a5c50d8c is described below
commit b9a5c50d8c92a7ec6f15b2ec9005d1bbd72d1024
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Tue Jan 23 21:41:58 2024 +0100
gnu: Add metal.
* gnu/packages/bioinformatics.scm (metal): New variable.
Change-Id: I70fd30c18303f61a9f6720e70d4b4e57140a7140
---
gnu/packages/bioinformatics.scm | 39 +++++++++++++++++++++++++++++++++++++++
1 file changed, 39 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index fac29cfa98..95df728bc9 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8108,6 +8108,45 @@ probabilistic distances of genome abundance and
tetranucleotide frequency.")
(license (license:non-copyleft "file://license.txt"
"See license.txt in the distribution."))))
+(define-public metal
+ (package
+ (name "metal")
+ (version "2011-03-25")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "http://csg.sph.umich.edu/abecasis/Metal/"
+ "download/generic-metal-" version ".tar.gz"))
+ (sha256
+ (base32
+ "1bk00hc0xagmq0mabmbb8bykl75qd4kfyirba869h4x6hmn4a0f3"))))
+ (build-system gnu-build-system)
+ (arguments
+ (list
+ #:tests? #f
+ #:make-flags
+ #~(list (string-append "INSTALLDIR=" #$output "/bin") "all")
+ #:phases
+ '(modify-phases %standard-phases
+ (replace 'configure
+ (lambda _
+ (substitute* "Makefile"
+ (("^CFLAGS=") "CFLAGS=-std=c++11 ")))))))
+ (inputs (list zlib `(,zlib "static")))
+ (home-page "http://csg.sph.umich.edu/abecasis/Metal/")
+ (synopsis "Facilitate meta-analysis of large datasets")
+ (description "METAL is a tool for meta-analysis genomewide association
+scans. METAL can combine either test statistics and standard errors or
+p-values across studies (taking sample size and direction of effect into
+account). METAL analysis is a convenient alternative to a direct analysis of
+merged data from multiple studies. It is especially appropriate when data
+from the individual studies cannot be analyzed together because of differences
+in ethnicity, phenotype distribution, gender or constraints in sharing of
+individual level data imposed. Meta-analysis results in little or no loss of
+efficiency compared to analysis of a combined dataset including data from all
+individual studies.")
+ (license license:bsd-3)))
+
(define-public minced
(package
(name "minced")
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