The latest release 1.2.4 of eLyXer had a subtle bug: the enclosed elyxer.py file did not contain the latest changes by jras (make footnotes correctly work with end and hover options). So I have released version 1.2.5 to correct the issue; the code is identical, but the executable elyxer.py is now correctly updated. If you were building elyxer.py from source you don't have to update.