--- Begin Message ---
|
Subject: |
[PATCH 1/2] gnu: Add r-metafor. |
|
Date: |
Sat, 31 Oct 2020 20:38:50 +0530 |
* gnu/packages/cran.scm (r-metafor): New variable.
---
gnu/packages/cran.scm | 39 +++++++++++++++++++++++++++++++++++++++
1 file changed, 39 insertions(+)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 75d9ae7de2..cc4e5f2bba 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -24745,3 +24745,42 @@ mutations in each of 96 trinucleotide contexts and
identifies
the weighted combination of published signatures that, when summed,
most closely reconstructs the mutational profile.")
(license license:gpl2+)))
+
+(define-public r-metafor
+ (package
+ (name "r-metafor")
+ (version "2.4-0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "metafor" version))
+ (sha256
+ (base32
+ "1b599fxk7s0brkchmx698fr5k4g1kzkia2rnlvhg349ffs5nfjmn"))))
+ (properties `((upstream-name . "metafor")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-matrix" ,r-matrix)
+ ("r-nlme" ,r-nlme)))
+ (home-page
+ "https://cran.r-project.org/web/packages/metafor";)
+ (synopsis "Meta-Analysis Package for R")
+ (description
+ "This package provides a comprehensive collection of
+functions for conducting meta-analyses in R. The package
+includes functions to calculate various effect sizes or outcome
+measures, fit fixed-, random-, and mixed-effects models to such
+data, carry out moderator and meta-regression analyses, and create
+various types of meta-analytical plots (e.g., forest, funnel, radial,
+L'Abbe, Baujat, GOSH plots). For meta-analyses of binomial and
+person-time data, the package also provides functions that implement
+specialized methods, including the Mantel-Haenszel method, Peto's
+method, and a variety of suitable generalized linear (mixed-effects)
+models (i.e., mixed-effects logistic and Poisson regression models).
+Finally, the package provides functionality for fitting meta-analytic
+multivariate/multilevel models that account for non-independent
+sampling errors and/or true effects (e.g., due to the inclusion of
+multiple treatment studies, multiple endpoints, or other forms of clustering).
+Network meta-analyses and meta-analyses accounting for known correlation
+structures (e.g., due to phylogenetic relatedness) can also be conducted.")
+ (license license:gpl2+)))
--
2.28.0
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--- Begin Message ---
|
Subject: |
Re: [bug#44345] [PATCH 1/2] gnu: Add r-metafor. |
|
Date: |
Tue, 22 Dec 2020 23:32:48 +0100 |
|
User-agent: |
mu4e 1.4.13; emacs 27.1 |
zimoun <zimon.toutoune@gmail.com> writes:
> Hi Aniket,
>
> On Sat, 31 Oct 2020 at 20:38, Aniket Patil <aniket112.patil@gmail.com> wrote:
>> * gnu/packages/cran.scm (r-metafor): New variable.
>> ---
>> gnu/packages/cran.scm | 39 +++++++++++++++++++++++++++++++++++++++
>> 1 file changed, 39 insertions(+)
>>
>> diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
>> index 75d9ae7de2..cc4e5f2bba 100644
>> --- a/gnu/packages/cran.scm
>> +++ b/gnu/packages/cran.scm
>
> Idem than bug#44311. <http://issues.guix.gnu.org/issue/44311>
>
> Repeat here to easy the reading. :-)
>
> The patch does not apply because the file gnu/packages/cran.scm changed
> in the meantime. I am sorry that we have not been enough reactive.
I applied the two patches with commit
6d1160db8e16ee0da5b38c5297cf22cd6dd230d6.
I used “git am -C0” to ignore mismatched context. I also updated the
descriptions and re-indented the definitions.
--
Ricardo
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