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Subject: |
[PATCH 2/2] gnu: Add r-altmeta. |
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Date: |
Sat, 31 Oct 2020 20:38:51 +0530 |
* gnu/packages/cran.scm (r-altmeta): New variable.
---
gnu/packages/cran.scm | 41 +++++++++++++++++++++++++++++++++++++++++
1 file changed, 41 insertions(+)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index cc4e5f2bba..b40c5bdb21 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -24784,3 +24784,44 @@ multiple treatment studies, multiple endpoints, or
other forms of clustering).
Network meta-analyses and meta-analyses accounting for known correlation
structures (e.g., due to phylogenetic relatedness) can also be conducted.")
(license license:gpl2+)))
+
+(define-public r-altmeta
+ (package
+ (name "r-altmeta")
+ (version "3.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "altmeta" version))
+ (sha256
+ (base32
+ "0z252lbsknqp33i0b0xf5r7spr535iq47bv40vgip6nsqhgrl7b0"))))
+ (properties `((upstream-name . "altmeta")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-coda" ,r-coda)
+ ("r-lme4" ,r-lme4)
+ ("r-matrix" ,r-matrix)
+ ("r-metafor" ,r-metafor)
+ ("r-rjags" ,r-rjags)))
+ (home-page
+ "https://cran.r-project.org/web/packages/altmeta";)
+ (synopsis "Alternative Meta-Analysis Methods")
+ (description
+ "This package provides alternative statistical methods for
+meta-analysis, including: - bivariate generalized linear mixed
+models for synthesizing odds ratios, relative risks, and risk
+differences (Chu et al., 2012 <doi:10.1177/0962280210393712>) -
+heterogeneity tests and measures that are robust to outliers
+(Lin et al., 2017 <doi:10.1111/biom.12543>); - measures, tests,
+and visualization tools for publication bias or small-study effects
+(Lin and Chu, 2018 <doi:10.1111/biom.12817>; Lin, 2019
+<doi:10.1002/jrsm.1340>; Lin, 2020 <doi:10.1177/0962280220910172>;
+Shi et al., 2020 <doi:10.1002/jrsm.1415>); - meta-analysis of diagnostic
+tests for synthesizing sensitivities, specificities, etc.
+(Reitsma et al., 2005 <doi:10.1016/j.jclinepi.2005.02.022>; Chu and Cole,
+2006 <doi:10.1016/j.jclinepi.2006.06.011>); - meta-analysis methods for
+synthesizing proportions (Lin and Chu, 2020
+<doi:10.1097/ede.0000000000001232>); - models for multivariate
+meta-analysis (Lin and Chu, 2018 <doi:10.1002/jrsm.1293>).")
+ (license license:gpl2+)))
--
2.28.0
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--- Begin Message ---
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Subject: |
Re: [bug#44345] [PATCH 1/2] gnu: Add r-metafor. |
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Date: |
Tue, 22 Dec 2020 23:32:48 +0100 |
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User-agent: |
mu4e 1.4.13; emacs 27.1 |
zimoun <zimon.toutoune@gmail.com> writes:
> Hi Aniket,
>
> On Sat, 31 Oct 2020 at 20:38, Aniket Patil <aniket112.patil@gmail.com> wrote:
>> * gnu/packages/cran.scm (r-metafor): New variable.
>> ---
>> gnu/packages/cran.scm | 39 +++++++++++++++++++++++++++++++++++++++
>> 1 file changed, 39 insertions(+)
>>
>> diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
>> index 75d9ae7de2..cc4e5f2bba 100644
>> --- a/gnu/packages/cran.scm
>> +++ b/gnu/packages/cran.scm
>
> Idem than bug#44311. <http://issues.guix.gnu.org/issue/44311>
>
> Repeat here to easy the reading. :-)
>
> The patch does not apply because the file gnu/packages/cran.scm changed
> in the meantime. I am sorry that we have not been enough reactive.
I applied the two patches with commit
6d1160db8e16ee0da5b38c5297cf22cd6dd230d6.
I used “git am -C0” to ignore mismatched context. I also updated the
descriptions and re-indented the definitions.
--
Ricardo
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