bug#63974: closed ([PATCH] gnu: Add python-mofax.)

[GNU bug Tracking System]

Your message dated Fri, 09 Jun 2023 17:10:37 +0200
with message-id <878rcsoem5.fsf@elephly.net>
and subject line [PATCH] gnu: Add python-mofax.
has caused the debbugs.gnu.org bug report #63974,
regarding [PATCH] gnu: Add python-mofax.
to be marked as done.

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-- 
63974: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=63974
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> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH] gnu: Add python-mofax.
>
>
>
>
> Date: 
>
> Fri, 9 Jun 2023 16:05:57 +0200
>
>
>
>
> * gnu/packages/bioinformatics.scm (python-mofax): New variable.
> ---
>  gnu/packages/bioinformatics.scm | 40 +++++++++++++++++++++++++++++++++
>  1 file changed, 40 insertions(+)
>
> diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
> index 9ce28596c2..1caea80f86 100644
> --- a/gnu/packages/bioinformatics.scm
> +++ b/gnu/packages/bioinformatics.scm
> @@ -3312,6 +3312,46 @@ (define-public python-bx-python
>  multiple sequence alignments.")
>      (license license:expat)))
>  
> +(define-public python-mofax
> +  (let ((commit "4d96f8f0a5d5251847353656f523684d66c3c47a")
> +        (revision "0"))
> +    (package
> +      (name "python-mofax")
> +      (version (git-version "0.4.0" revision commit))
> +      (source (origin
> +                (method git-fetch)
> +                (uri (git-reference
> +                      (url "https://github.com/bioFAM/mofax";)
> +                      (commit commit)))
> +                (file-name (git-file-name name version))
> +                (sha256
> +                 (base32
> +                  "1lwrw0qyvvnyiqz1l20dhcf7dxidb80cqgvk78czvdgba87yxzqx"))
> +                (modules '((guix build utils)))
> +                (snippet '(substitute* "pyproject.toml"
> +                            (("^#.*")
> +                             "")))))
> +      (build-system pyproject-build-system)
> +      (arguments
> +       (list
> +        ;; This test is failing due to a bug. The bug has been reported to the 
> developers. See https://github.com/bioFAM/mofax/issues/12 for more info.
> +        #:test-flags '(list "-k" "not test_get_methods")))
> +      (propagated-inputs (list python-h5py
> +                               python-matplotlib
> +                               python-pandas
> +                               python-poetry-core
> +                               python-scipy
> +                               python-seaborn))
> +      (native-inputs (list python-numpy python-pytest))
> +      (home-page "https://github.com/bioFAM/mofax";)
> +      (synopsis
> +       "Motif activity finder for transcription factor motif analysis")
> +      (description
> +       "MoFax is a Python package for transcription factor motif analysis.
> +It provides convenience functions to load and visualize factor
> +models trained with MOFA+ in Python.")
> +      (license license:expat))))
> +
>  (define-public python-pyega3
>    (package
>      (name "python-pyega3")
>
> base-commit: e8f9fb3e03ea8fee0e13f13706a6b16414f74a7b
> -- 
> 2.34.1
>
>
>
>
> --- End Message ---
> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH] gnu: Add python-mofax.
>
>
>
>
> Date: 
>
> Fri, 09 Jun 2023 17:10:37 +0200
>
>
>
>
> User-agent: 
>
> mu4e 1.10.2; emacs 28.2
>
>
>
>
> Pushed with minor changes.  Thanks!
>
> -- 
> Ricardo
>
>
> --- End Message ---