[BUG] Warning (org-element-cache) [9.6.4 ( @, /nix/store/k8k0vpylhia0i8f95i8wxqgqkswijgz5-emacs-packages-deps/share/emacs/site-lisp/elpa/org-9.6.4/)]

[Peter J. Jones]

This appears to happen when I edit an org file in another Emacs instance:

Warning (org-element-cache): org-element--cache: Added org-data parent 
to non-headline element: (planning (:closed nil :deadline nil :scheduled 
(timestamp (:type active :raw-value "<2023-06-16 Fri +1w>" :year-start 
2023 :month-start 6 :day-start 16 :hour-start nil :minute-start nil 
:year-end 2023 :month-end 6 :day-end 16 :hour-end nil :minute-end nil 
:begin 71025 :end 71045 :post-blank 0 :repeater-type cumulate 
:repeater-value 1 :repeater-unit week)) :begin 71011 :end 71046 
:post-blank 0 :post-affiliated 71011 :mode planning :granularity element 
:cached t :parent (section (:begin 71011 :end 90368 :contents-begin 
71011 :contents-end 90368 :robust-begin 71011 :robust-end 90366 
:post-blank 0 :post-affiliated 71011 :mode section :granularity element 
:cached nil :parent (headline (:raw-value "xxxx" :begin 70951 :end 90368 
:pre-blank 0 :contents-begin 71011 :contents-end 90368 :robust-begin 
71110 :robust-end 90366 :level 2 :priority nil :tags (#("@online" 0 7 
(isearch-open-invisible-temporary org-fold-core--isearch-show-temporary 
isearch-open-invisible org-fold-core--isearch-show keymap (keymap 
(follow-link . mouse-face) (mouse-3 . org-find-file-at-mouse) (mouse-2 . 
org-open-at-mouse)) mouse-face highlight face (org-tag org-level-2) 
fontified t)) #("5m" 0 2 (isearch-open-invisible-temporary 
org-fold-core--isearch-show-temporary isearch-open-invisible 
org-fold-core--isearch-show keymap (keymap (follow-link . mouse-face) 
(mouse-3 . org-find-file-at-mouse) (mouse-2 . org-open-at-mouse)) 
mouse-face highlight face (org-tag org-level-2) fontified t))) 
:todo-keyword #("NEXT" 0 4 (fontified t face ((:foreground "#66cccc" 
:weight bold) org-level-2) isearch-open-invisible 
org-fold-core--isearch-show isearch-open-invisible-temporary 
org-fold-core--isearch-show-temporary)) :todo-type todo :post-blank 0 
:footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 
70951 :scheduled (timestamp (:type active :raw-value "<2023-06-16 Fri 
+1w>" :year-start 2023 :month-start 6 :day-start 16 :hour-start nil 
:minute-start nil :year-end 2023 :month-end 6 :day-end 16 :hour-end nil 
:minute-end nil :begin 71025 :end 71045 :post-blank 0 :repeater-type 
cumulate :repeater-value 1 :repeater-unit week)) :LAST_REPEAT 
"[2023-06-09 Fri 15:13]" :title "xxxx" :mode nil :granularity element 
:cached nil :parent (headline (:raw-value "Routine Maintenance" :begin 
70204 :end 97437 :pre-blank 0 :contents-begin 70236 :contents-end 97437 
:robust-begin 70238 :robust-end 97435 :level 1 :priority nil :tags 
(#("routine" 0 7 (keymap (keymap (follow-link . mouse-face) (mouse-3 . 
org-find-file-at-mouse) (mouse-2 . org-open-at-mouse)) mouse-face 
highlight face (org-tag org-level-1) fontified t))) :todo-keyword nil 
:todo-type nil :post-blank 0 :footnote-section-p nil :archivedp nil 
:commentedp nil :post-affiliated 70204 :title "Routine Maintenance" 
:mode nil :granularity element :cached nil :parent (org-data (:begin 1 
:contents-begin 1 :contents-end 73171 :end 73171 :robust-begin 3 
:robust-end 73169 :post-blank 0 :post-affiliated 1 :path 
"/home/pjones/notes/gtd/rfa.org" :mode org-data :CATEGORY "RFA" :cached 
t)) :org-element--cache-sync-key (24 . 70204))) 
:org-element--cache-sync-key (24 . 70951))) :org-element--cache-sync-key 
(24 . 71010))) :org-element--cache-sync-key (24 . 71011)))
If this warning appears regularly, please report the warning text to Org 
mode mailing list (M-x org-submit-bug-report). Disable showing Disable 
logging

This warning appears several times a day.

Emacs  : GNU Emacs 28.2 (build 1, x86_64-pc-linux-gnu, X toolkit, cairo 
version 1.16.0, Xaw3d scroll bars)
Package: Org mode version 9.6.4 ( @ 
/nix/store/k8k0vpylhia0i8f95i8wxqgqkswijgz5-emacs-packages-deps/share/emacs/site-lisp/elpa/org-9.6.4/)

current state:
==============
(setq
 org-link-elisp-confirm-function 'yes-or-no-p
 org-appear-autokeywords t
 org-hide-emphasis-markers t
 org-bibtex-headline-format-function #[257 "\300\236A\207" [:title] 3 
"\n\n(fn ENTRY)"]
 org-log-done 'time
 org-capture-bookmark nil
 org-agenda-tags-todo-honor-ignore-options t
 org-log-into-drawer t
 org-agenda-skip-scheduled-if-done t
 org-persist-after-read-hook '(org-element--cache-persist-after-read)
 org-latex-toc-command 
"{\n\\hypersetup{linkcolor=black}\n\\tableofcontents\n}\n"
 org-format-latex-options '(:foreground default :background default 
:scale 1.5
                            :html-foreground "Black" :html-background 
"Transparent"
                            :html-scale 1.0 :matchers ("begin" "$1" "$" 
"$$" "\\(" "\\["))
 org-export-before-parsing-hook '(org-attach-expand-links)
 org-clock-cancel-hook '(pjones:org-clock-update-dbus)
 org-latex-compiler "xelatex"
 org-cycle-tab-first-hook '(org-babel-hide-result-toggle-maybe 
org-babel-header-arg-expand)
 org-default-notes-file "~/notes/gtd/inbox.org"
 org-roam-find-file-hook '(pjones:org-roam-buffer-name 
org-roam-buffer--setup-redisplay-h
org-roam--register-completion-functions-h
                           org-roam--replace-roam-links-on-save-h
org-roam-db-autosync--setup-update-on-save-h)
 org-refile-use-outline-path t
 org-archive-hook '(org-attach-archive-delete-maybe)
 org-clock-in-hook '(pjones:org-clock-update-dbus)
 org-odt-format-inlinetask-function 
'org-odt-format-inlinetask-default-function
 org-ascii-format-drawer-function #[771 "\207" [] 4 "\n\n(fn NAME 
CONTENTS WIDTH)"]
 org-cycle-hook '(org-cycle-hide-archived-subtrees 
org-cycle-show-empty-lines
org-cycle-optimize-window-after-visibility-change
                  org-cycle-display-inline-images)
 org-clock-clocked-in-display 'frame-title
 org-agenda-show-inherited-tags nil
 org-persist-before-read-hook '(org-element--cache-persist-before-read)
 org-mode-hook '(er/add-org-mode-expansions org-superstar-mode 
org-appear-mode
                 pjones:org-mode-hook
                 #[0 "\300\301\302\303\304$\207"
                   [add-hook change-major-mode-hook org-fold-show-all 
append local] 5]
                 #[0 "\300\301\302\303\304$\207"
                   [add-hook change-major-mode-hook 
org-babel-show-result-all append local] 5]
                 org-babel-result-hide-spec org-babel-hide-all-hashes
                 #[0 "\301\211\207" [imenu-create-index-function 
org-imenu-get-tree] 2])
 org-babel-load-languages '((emacs-lisp . t) (mermaid . t))
 org-appear-autoentities t
 org-agenda-skip-deadline-if-done t
 org-src-window-setup 'current-window
 org-link-file-path-type 'relative
 org-roam-ref-annotation-function 'org-roam-ref-read--annotation
 org-roam-directory "~/notes/wiki"
 org-agenda-time-grid '((daily today require-timed) (800 1000 1200 1400 
1600 1800 2000)
                        "......" "----------------")
 org-agenda-span 'day
 org-latex-format-drawer-function #[514 "\207" [] 3 "\n\n(fn _ CONTENTS)"]
 org-ellipsis "…"
 org-roam-db-node-include-function 'org-before-first-heading-p
 org-latex-format-headline-function 
'org-latex-format-headline-default-function
 org-confirm-shell-link-function 'yes-or-no-p
 org-appear-autosubmarkers t
 org-adapt-indentation t
 org-html-format-drawer-function #[514 "\207" [] 3 "\n\n(fn NAME 
CONTENTS)"]
 outline-isearch-open-invisible-function 'outline-isearch-open-invisible
 org-stuck-projects '("+project+LEVEL=3" ("NEXT" "WAITING" "BLOCKED") 
nil "")
 org-icalendar-include-todo t
 org-html-validation-link nil
 org-export-before-processing-hook '(pjones:org-roam-insert-backlinks)
 org-odt-format-headline-function 'org-odt-format-headline-default-function
 org-agenda-mode-hook '(pjones:org-agenda-mode-hook)
 org-roam-capture-preface-hook '(org-roam-capture--try-capture-to-ref-h)
 org-attach-dir-relative t
 org-agenda-before-write-hook '(org-agenda-add-entry-text)
 org-agenda-after-show-hook '(pjones:org-hide-others)
 org-capture-prepare-finalize-hook '(org-roam-capture--install-finalize-h)
 org-archive-file-header-format nil
 org-latex-packages-alist '(("" "booktabs" t) ("" "color" t) ("" 
"fontspec" t)
                            ("newfloat" "minted" t) ("" "svg" t) ("" 
"transparent" t)
                            ("" "xcolor" t))
 org-roam-preview-function 'org-roam-preview-default-function
 org-src-mode-hook '(org-src-babel-configure-edit-buffer 
org-src-mode-configure-edit-buffer)
 org-roam-db-autosync-mode t
 org-html-htmlize-output-type 'css
 org-confirm-elisp-link-function 'yes-or-no-p
 org-agenda-window-setup 'current-window
 org-latex-src-block-backend 'minted
 org-superstar-headline-bullets-list '(8269 9670 11096 9654 9702)
 org-latex-hyperref-template "\\hypersetup{\n pdfauthor={%a},\n      
pdftitle={%t},\n pdfkeywords={%k},\n      pdfsubject={%d},\n 
pdfcreator={%c},\n      pdflang={%L},\n colorlinks=true,\n      
linkcolor=blue,\n      urlcolor=blue\n}\n"
 org-log-buffer-setup-hook '(org-roam-log--setup)
 org-fold-show-context-detail '((default . tree))
 org-special-ctrl-k t
 org-hide-leading-stars t
 org-latex-tables-booktabs t
 org-todo-keywords '((sequence "TODO(t)" "|" "DONE(d)")
                     (sequence "NEXT(n)" "WAITING(w)" "BLOCKED(b)" "|" 
"DONE(d)"
                      "CANCELLED(c)")
                     )
 org-id-link-to-org-use-id 'create-if-interactive
 org-clock-out-hook '(pjones:org-clock-update-dbus)
 org-roam-capture-new-node-hook '(org-roam-capture--insert-captured-ref-h)
 org-speed-command-hook '(org-speed-command-activate 
org-babel-speed-command-activate)
 org-html-format-inlinetask-function 
'org-html-format-inlinetask-default-function
 org-ascii-format-inlinetask-function 'org-ascii-format-inlinetask-default
 org-latex-default-class "pjones-article"
 org-odt-format-drawer-function #[514 "\207" [] 3 "\n\n(fn NAME CONTENTS)"]
 org-fold-core-isearch-open-function 'org-fold-core--isearch-reveal
 org-export-with-smart-quotes t
 org-preview-latex-default-process 'imagemagick
 org-M-RET-may-split-line t
 org-latex-format-inlinetask-function 
'org-latex-format-inlinetask-default-function
 org-persist-before-write-hook '(org-element--cache-persist-before-write)
 org-clock-mode-line-total 'current
 org-tab-first-hook '(org-babel-hide-result-toggle-maybe 
org-babel-header-arg-expand)
 org-agenda-todo-ignore-scheduled 'future
 org-link-shell-confirm-function 'yes-or-no-p
 org-babel-pre-tangle-hook '(save-buffer)
 org-agenda-loop-over-headlines-in-active-region nil
 org-agenda-start-on-weekday nil
 org-attach-id-dir "~/notes/attachments/"
 org-todo-keyword-faces '(("TODO" :foreground "#66cccc" :weight bold)
                          ("NEXT" :foreground "#66cccc" :weight bold)
                          ("WAITING" :foreground "#cc99cc" :weight bold)
                          ("BLOCKED" :inherit org-agenda-dimmed-todo-face))
 org-edit-src-persistent-message nil
 org-log-refile 'time
 org-attach-method 'ln
 org-occur-hook '(org-first-headline-recenter)
 org-roam-log-setup-hook '(org-roam--register-completion-functions-h)
 org-metadown-hook '(org-babel-pop-to-session-maybe)
 org-roam-node-annotation-function 'org-roam-node-read--annotation
 org-link-parameters '(("roam" :follow org-roam-link-follow-link)
                       ("attachment" :follow org-attach-follow :complete
                        org-attach-complete-link)
                       ("eww" :follow org-eww-open :store 
org-eww-store-link)
                       ("rmail" :follow org-rmail-open :store 
org-rmail-store-link)
                       ("mhe" :follow org-mhe-open :store 
org-mhe-store-link)
                       ("irc" :follow org-irc-visit :store 
org-irc-store-link :export
                        org-irc-export)
                       ("info" :follow org-info-open :export 
org-info-export :store
                        org-info-store-link :insert-description
                        org-info-description-as-command)
                       ("gnus" :follow org-gnus-open :store 
org-gnus-store-link)
                       ("docview" :follow org-docview-open :export 
org-docview-export :store
                        org-docview-store-link)
                       ("bibtex" :follow org-bibtex-open :store 
org-bibtex-store-link)
                       ("bbdb" :follow org-bbdb-open :export 
org-bbdb-export :complete
                        org-bbdb-complete-link :store org-bbdb-store-link)
                       ("w3m" :store org-w3m-store-link)
                       ("doi" :follow org-link-doi-open :export 
org-link-doi-export)
                       ("id" :follow org-roam-id-open) ("file+sys") 
("file+emacs")
                       ("shell" :follow org-link--open-shell)
                       ("news" :follow
                        #[514 "\301\300\302Q\"\207" ["news" browse-url 
":"] 6
                          "\n\n(fn URL ARG)"]
                        )
                       ("mailto" :follow
                        #[514 "\301\300\302Q\"\207" ["mailto" 
browse-url ":"] 6
                          "\n\n(fn URL ARG)"]
                        )
                       ("https" :follow
                        #[514 "\301\300\302Q\"\207" ["https" browse-url 
":"] 6
                          "\n\n(fn URL ARG)"]
                        )
                       ("http" :follow
                        #[514 "\301\300\302Q\"\207" ["http" browse-url 
":"] 6
                          "\n\n(fn URL ARG)"]
                        )
                       ("ftp" :follow
                        #[514 "\301\300\302Q\"\207" ["ftp" browse-url 
":"] 6
                          "\n\n(fn URL ARG)"]
                        )
                       ("help" :follow org-link--open-help :store 
org-link--store-help)
                       ("file" :complete org-link-complete-file)
                       ("elisp" :follow org-link--open-elisp))
 org-html-format-headline-function 
'org-html-format-headline-default-function
 org-roam-capture-templates '(("b" "Knowledge Base" plain "%?" :target
                               (file+head 
"garden/${pjones:org-roam-node-to-file}"
                                "#+title: ${title}\n")
                               :unnarrowed t)
                              )
 org-metaup-hook '(org-babel-load-in-session-maybe)
 org-attach-auto-tag nil
 org-refile-allow-creating-parent-nodes t
 org-use-fast-todo-selection 'expert
 org-imenu-depth 3
 org-latex-pdf-process '("latexmk -xelatex -pdfxe -shell-escape %f")
 org-link-frame-setup '((file . find-file))
 org-outline-path-complete-in-steps nil
 org-icalendar-combined-agenda-file "~/notes/gtd/calendar.ics"
 org-special-ctrl-a/e t
 org-tags-column 0
 org-superstar-item-bullet-alist '((42 . 45) (43 . 8226) (45 . 8227))
 org-agenda-current-time-string "now - - - - - - - - - - - - - - - - - 
- - - - - - - -"
 org-attach-store-link-p 'attached
 org-roam-indirect-buffer-hook '(org-roam--register-completion-functions-h)
 org-clock-frame-title-format '((t org-mode-line-string) " "
                                (:eval (pjones:frame-title-file-name)))
 org-agenda-todo-ignore-deadlines 'near
 org-agenda-time-leading-zero t
 )