[Espressomd-maintainer] Build failed in Jenkins: master-nightly-debug #208

[Jenkins Demon]

See <http://espressomd.org/jenkins/job/master-nightly-debug/208/changes>

Changes:

[richter] p3m on gpu

[richter] added p3m gpu feature for the python interface

[richter] space versus tab errors/mismatch

[richter] hopefully fixed space/indent errors

[richter] final indent fix

[Florian Weik] Fix ewald in tcl interface.

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[...truncated 270 lines...]
configure: creating ./config.status
config.status: creating Makefile
config.status: creating config/Makefile
config.status: creating config/myconfig-sample-header.hpp
config.status: creating src/Makefile
config.status: creating src/core/Makefile
config.status: creating src/tcl/Makefile
config.status: creating src/python/espressomd/Makefile
config.status: creating tools/Makefile
config.status: creating scripts/Makefile
config.status: creating testsuite/Makefile
config.status: creating doc/Makefile
config.status: creating doc/logo/Makefile
config.status: creating doc/ug/Makefile
config.status: creating doc/dg/Makefile
config.status: creating doc/doxygen/Makefile
config.status: creating doc/tutorials/Makefile
config.status: creating doc/tutorials/01-lennard_jones/Makefile
config.status: creating doc/tutorials/02-charged_system/Makefile
config.status: creating doc/tutorials/03-object_in_fluid/Makefile
config.status: creating doc/latexit.sh
config.status: creating testsuite/runtest.sh
config.status: creating tools/es_mpiexec
config.status: creating src/python/pypresso
config.status: creating src/acconfig.hpp
config.status: executing depfiles commands
config.status: executing libtool commands
config.status: executing myconfig-sample.hpp commands
****************************************************************
*                   Configuration summary                      *
****************************************************************
platform detected       = x86_64-suse-linux-gnu
package version         = 3.4-dev-1033-gf8efde0
development sources     = yes

Compiler
--------
compiler                = mpic++
linker                  = /usr/x86_64-suse-linux/bin/ld -m elf_x86_64
c++ compiler flags      = -Wall -O3 
c++ preprocessor flags  =  -I/usr/local/cuda/include
linker flags            =  -L/usr/local/cuda/lib64
libraries               = -lhdf5 -ltcl8.6 -lcurand -lcublas -lcufft -lcudart 
-lfftw3  -lm
using debug flags       = 
using profiling flags   = 

Libraries
---------
FFTW                    = yes
efence                  = no

Cuda
----
CUDA compiler           = /usr/local/cuda/bin/nvcc
CUDA flags              =  --ptxas-options=-v -gencode 
arch=compute_20,code=compute_20

Tcl/Tk
------
Tcl version             = tcl8.6
Tk version              = none

Python
------
python                  = /usr/bin/python -B
build python interface  = 

Other settings
--------------
config                  = myconfig.hpp
installation prefix     = /home/jenkins/Espresso
number of test tasks    = 8
mympiexec               = 
<http://espressomd.org/jenkins/job/master-nightly-debug/ws/mympiexec.sh>
mpiexec                 = /usr/lib64/mpi/gcc/openmpi/bin/mpiexec
pdflatex                = /usr/bin/pdflatex
makeindex               = /usr/bin/makeindex
bibtex                  = /usr/bin/bibtex
doxygen                 = /usr/bin/doxygen
dot                     = /usr/bin/dot

Not building Python interface.
END CONFIGURE
<http://espressomd.org/jenkins/job/master-nightly-debug/ws/>
+ maintainer/jenkins/build.sh
23542 (process ID) old priority 0, new priority 5
  srcdir=<http://espressomd.org/jenkins/job/master-nightly-debug/ws/>
  builddir=<http://espressomd.org/jenkins/job/master-nightly-debug/ws/>
  insource=true
START BUILD
  myconfig=nocheck-maxset
  build_procs=4
<http://espressomd.org/jenkins/job/master-nightly-debug/ws/> 
<http://espressomd.org/jenkins/job/master-nightly-debug/ws/>
Copying nocheck-maxset.hpp to 
<http://espressomd.org/jenkins/job/master-nightly-debug/ws/myconfig.hpp...>
>make -j 4
Making all in config
make[1]: Entering directory 
`<http://espressomd.org/jenkins/job/master-nightly-debug/ws/config'>
make[1]: Nothing to be done for `all'.
make[1]: Leaving directory 
`<http://espressomd.org/jenkins/job/master-nightly-debug/ws/config'>
Making all in src
make[1]: Entering directory 
`<http://espressomd.org/jenkins/job/master-nightly-debug/ws/src'>
make  all-recursive
make[2]: Entering directory 
`<http://espressomd.org/jenkins/job/master-nightly-debug/ws/src'>
Making all in core
make[3]: Entering directory 
`<http://espressomd.org/jenkins/job/master-nightly-debug/ws/src/core'>
  GEN      myconfig-final.hpp <= ../../myconfig.hpp
  GEN      config-features.hpp
  GEN      config-features.cpp
make  all-am
make[4]: Entering directory 
`<http://espressomd.org/jenkins/job/master-nightly-debug/ws/src/core'>
  CXX      config-features.lo
  CXX      cells.lo
  CXX      collision.lo
  CXX      communication.lo
  CXX      comfixed.lo
  CXX      comforce.lo
  CXX      constraint.lo
  CXX      cuda_interface.lo
  CXX      cuda_init.lo
  CXX      debug.lo
  CXX      domain_decomposition.lo
domain_decomposition.cpp: In function 'void dd_init_cell_interactions()':
domain_decomposition.cpp:547:13: warning: variable 'this_n' set but not used 
[-Wunused-but-set-variable]
   int  c,nn,this_n;
             ^
  CXX      electrokinetics_pdb_parse.lo
  CXX      energy.lo
  CXX      external_potential.lo
  CXX      errorhandling.lo
  CXX      fft.lo
  CXX      fft-common.lo
  CXX      fft-dipolar.lo
  CXX      forcecap.lo
  CXX      forces.lo
  CXX      galilei.lo
  CXX      ghosts.lo
  CXX      global.lo
  CXX      grid.lo
  CXX      halo.lo
  CXX      iccp3m.lo
  CXX      imd.lo
  CXX      initialize.lo
  CXX      integrate.lo
  CXX      interaction_data.lo
  CXX      lattice.lo
  CXX      layered.lo
  CXX      lb.lo
  CXX      lb-boundaries.lo
  CXX      lbgpu.lo
  CXX      lees_edwards.lo
  CXX      lees_edwards_domain_decomposition.lo
  CXX      lees_edwards_comms_manager.lo
  CXX      metadynamics.lo
  CXX      minimize_energy.lo
  CXX      modes.lo
lb.cpp:139:12: warning: 'failcounter' defined but not used [-Wunused-variable]
 static int failcounter=0;
            ^
  CXX      molforces.lo
  CXX      mol_cut.lo
  CXX      nemd.lo
  CXX      nsquare.lo
  CXX      particle_data.lo
  CXX      polymer.lo
  CXX      pressure.lo
  CXX      random.lo
  CXX      rattle.lo
  CXX      reaction.lo
  CXX      readpdb.lo
  CXX      rotation.lo
  CXX      RuntimeErrorCollector.lo
  CXX      specfunc.lo
  CXX      statistics.lo
  CXX      statistics_chain.lo
  CXX      statistics_cluster.lo
  CXX      statistics_correlation.lo
  CXX      statistics_fluid.lo
  CXX      statistics_molecule.lo
  CXX      statistics_observable.lo
  CXX      statistics_wallstuff.lo
  CXX      thermostat.lo
  CXX      topology.lo
  CXX      tuning.lo
  CXX      uwerr.lo
  CXX      verlet.lo
  CXX      virtual_sites.lo
  CXX      virtual_sites_com.lo
  CXX      virtual_sites_relative.lo
  CXX      vmdsock.lo
  CXX      ghmc.lo
  CXX      integrate_sd.lo
  CXX      EspressoSystemInterface.lo
In file included from EspressoSystemInterface.hpp:24:0,
                 from EspressoSystemInterface.cpp:19:
debug.hpp:36:27: warning: '__malloc' initialized and declared 'extern' [enabled 
by default]
 #define malloc(s) __malloc((s),__FILE__, __LINE__)
                           ^
debug.hpp:36:27: error: 'void* __malloc' redeclared as different kind of symbol
debug.hpp:48:7: error: previous declaration of 'void* __malloc(unsigned int, 
const char*, int)'
 void *__malloc(unsigned int size, const char *where, int line);
       ^
/usr/include/stdlib.h:466:14: error: expected primary-expression before '__size'
 extern void *malloc (size_t __size) __THROW __attribute_malloc__ __wur;
              ^
/usr/include/stdlib.h:466:14: error: expected ')' before '__size'
debug.hpp:35:31: warning: '__realloc' initialized and declared 'extern' 
[enabled by default]
 #define realloc(v,s) __realloc((v),(s),__FILE__, __LINE__)
                               ^
debug.hpp:35:31: error: 'void* __realloc' redeclared as different kind of symbol
debug.hpp:45:7: error: previous declaration of 'void* __realloc(void*, unsigned 
int, const char*, int)'
 void *__realloc(void *old, unsigned int size, const char *where, int line);
       ^
/usr/include/stdlib.h:480:14: error: expected primary-expression before 'void'
 extern void *realloc (void *__ptr, size_t __size)
              ^
/usr/include/stdlib.h:480:14: error: expected ')' before 'void'
debug.hpp:37:23: error: variable or field '__free' declared void
 #define free(v) __free((v),__FILE__, __LINE__)
                       ^
/usr/include/stdlib.h:483:13: error: expected primary-expression before 'void'
 extern void free (void *__ptr) __THROW;
             ^
/usr/include/stdlib.h:483:13: error: expected ')' before 'void'
In file included from /usr/include/c++/4.8/bits/stl_algo.h:59:0,
                 from /usr/include/c++/4.8/algorithm:62,
                 from Vector.hpp:19,
                 from SystemInterface.hpp:22,
                 from EspressoSystemInterface.hpp:25,
                 from EspressoSystemInterface.cpp:19:
/usr/include/c++/4.8/cstdlib:136:11: error: '::free' has not been declared
   using ::free;
           ^
/usr/include/c++/4.8/cstdlib:140:11: error: '::malloc' has not been declared
   using ::malloc;
           ^
/usr/include/c++/4.8/cstdlib:153:11: error: '::realloc' has not been declared
   using ::realloc;
           ^
make[4]: *** [EspressoSystemInterface.lo] Error 1
make[4]: *** Waiting for unfinished jobs....
make[4]: Leaving directory 
`<http://espressomd.org/jenkins/job/master-nightly-debug/ws/src/core'>
make[3]: *** [all] Error 2
make[3]: Leaving directory 
`<http://espressomd.org/jenkins/job/master-nightly-debug/ws/src/core'>
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory 
`<http://espressomd.org/jenkins/job/master-nightly-debug/ws/src'>
make[1]: *** [all] Error 2
make[1]: Leaving directory 
`<http://espressomd.org/jenkins/job/master-nightly-debug/ws/src'>
make: *** [all-recursive] Error 1
Build step 'Execute shell' marked build as failure
[WARNINGS] Skipping publisher since build result is FAILURE
Archiving artifacts