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[Espressomd-maintainer] Build failed in Jenkins: master-nightly-debug #2
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From: |
Jenkins Demon |
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Subject: |
[Espressomd-maintainer] Build failed in Jenkins: master-nightly-debug #209 |
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Date: |
Fri, 26 Jun 2015 04:06:48 +0200 (CEST) |
See <http://espressomd.org/jenkins/job/master-nightly-debug/209/changes>
Changes:
[Florian Weik] Moved Ewald gpu to same parameter range as P3M in
coulomb-cloud-wall testcast.
[Florian Weik] Use error handling from cuda interface in Ewald GPU.
[Florian Weik] Identation.
[Florian Weik] Removed spurious memcpy from device in Ewald Gpu.
[Florian Weik] Added CUDA_DEBUG and synchronous error checking while in debug
mode.
------------------------------------------
[...truncated 270 lines...]
configure: creating ./config.status
config.status: creating Makefile
config.status: creating config/Makefile
config.status: creating config/myconfig-sample-header.hpp
config.status: creating src/Makefile
config.status: creating src/core/Makefile
config.status: creating src/tcl/Makefile
config.status: creating src/python/espressomd/Makefile
config.status: creating tools/Makefile
config.status: creating scripts/Makefile
config.status: creating testsuite/Makefile
config.status: creating doc/Makefile
config.status: creating doc/logo/Makefile
config.status: creating doc/ug/Makefile
config.status: creating doc/dg/Makefile
config.status: creating doc/doxygen/Makefile
config.status: creating doc/tutorials/Makefile
config.status: creating doc/tutorials/01-lennard_jones/Makefile
config.status: creating doc/tutorials/02-charged_system/Makefile
config.status: creating doc/tutorials/03-object_in_fluid/Makefile
config.status: creating doc/latexit.sh
config.status: creating testsuite/runtest.sh
config.status: creating tools/es_mpiexec
config.status: creating src/python/pypresso
config.status: creating src/acconfig.hpp
config.status: executing depfiles commands
config.status: executing libtool commands
config.status: executing myconfig-sample.hpp commands
****************************************************************
* Configuration summary *
****************************************************************
platform detected = x86_64-suse-linux-gnu
package version = 3.4-dev-1038-gf160ddc
development sources = yes
Compiler
--------
compiler = mpic++
linker = /usr/x86_64-suse-linux/bin/ld -m elf_x86_64
c++ compiler flags = -Wall -O3
c++ preprocessor flags = -I/usr/local/cuda/include
linker flags = -L/usr/local/cuda/lib64
libraries = -lhdf5 -ltcl8.6 -lcurand -lcublas -lcufft -lcudart
-lfftw3 -lm
using debug flags =
using profiling flags =
Libraries
---------
FFTW = yes
efence = no
Cuda
----
CUDA compiler = /usr/local/cuda/bin/nvcc
CUDA flags = --ptxas-options=-v -gencode
arch=compute_20,code=compute_20
Tcl/Tk
------
Tcl version = tcl8.6
Tk version = none
Python
------
python = /usr/bin/python -B
build python interface =
Other settings
--------------
config = myconfig.hpp
installation prefix = /home/jenkins/Espresso
number of test tasks = 8
mympiexec =
<http://espressomd.org/jenkins/job/master-nightly-debug/ws/mympiexec.sh>
mpiexec = /usr/lib64/mpi/gcc/openmpi/bin/mpiexec
pdflatex = /usr/bin/pdflatex
makeindex = /usr/bin/makeindex
bibtex = /usr/bin/bibtex
doxygen = /usr/bin/doxygen
dot = /usr/bin/dot
Not building Python interface.
END CONFIGURE
<http://espressomd.org/jenkins/job/master-nightly-debug/ws/>
+ maintainer/jenkins/build.sh
12324 (process ID) old priority 0, new priority 5
srcdir=<http://espressomd.org/jenkins/job/master-nightly-debug/ws/>
builddir=<http://espressomd.org/jenkins/job/master-nightly-debug/ws/>
insource=true
START BUILD
myconfig=nocheck-maxset
build_procs=4
<http://espressomd.org/jenkins/job/master-nightly-debug/ws/>
<http://espressomd.org/jenkins/job/master-nightly-debug/ws/>
Copying nocheck-maxset.hpp to
<http://espressomd.org/jenkins/job/master-nightly-debug/ws/myconfig.hpp...>
>make -j 4
Making all in config
make[1]: Entering directory
`<http://espressomd.org/jenkins/job/master-nightly-debug/ws/config'>
make[1]: Nothing to be done for `all'.
make[1]: Leaving directory
`<http://espressomd.org/jenkins/job/master-nightly-debug/ws/config'>
Making all in src
make[1]: Entering directory
`<http://espressomd.org/jenkins/job/master-nightly-debug/ws/src'>
make all-recursive
make[2]: Entering directory
`<http://espressomd.org/jenkins/job/master-nightly-debug/ws/src'>
Making all in core
make[3]: Entering directory
`<http://espressomd.org/jenkins/job/master-nightly-debug/ws/src/core'>
GEN config-features.hpp
GEN config-features.cpp
GEN myconfig-final.hpp <= ../../myconfig.hpp
make all-am
make[4]: Entering directory
`<http://espressomd.org/jenkins/job/master-nightly-debug/ws/src/core'>
CXX config-features.lo
CXX cells.lo
CXX collision.lo
CXX communication.lo
CXX comfixed.lo
CXX comforce.lo
CXX constraint.lo
CXX cuda_interface.lo
CXX cuda_init.lo
CXX debug.lo
CXX domain_decomposition.lo
CXX electrokinetics_pdb_parse.lo
CXX energy.lo
domain_decomposition.cpp: In function 'void dd_init_cell_interactions()':
domain_decomposition.cpp:547:13: warning: variable 'this_n' set but not used
[-Wunused-but-set-variable]
int c,nn,this_n;
^
CXX external_potential.lo
CXX errorhandling.lo
CXX fft.lo
CXX fft-common.lo
CXX fft-dipolar.lo
CXX forcecap.lo
CXX forces.lo
CXX galilei.lo
CXX ghosts.lo
CXX global.lo
CXX grid.lo
CXX halo.lo
CXX iccp3m.lo
CXX imd.lo
CXX initialize.lo
CXX integrate.lo
CXX interaction_data.lo
CXX lattice.lo
CXX layered.lo
CXX lb.lo
CXX lb-boundaries.lo
CXX lbgpu.lo
CXX lees_edwards.lo
CXX lees_edwards_domain_decomposition.lo
CXX lees_edwards_comms_manager.lo
CXX metadynamics.lo
CXX minimize_energy.lo
CXX modes.lo
CXX molforces.lo
CXX mol_cut.lo
CXX nemd.lo
lb.cpp:139:12: warning: 'failcounter' defined but not used [-Wunused-variable]
static int failcounter=0;
^
CXX nsquare.lo
CXX particle_data.lo
CXX polymer.lo
CXX pressure.lo
CXX random.lo
CXX rattle.lo
CXX reaction.lo
CXX readpdb.lo
CXX rotation.lo
CXX RuntimeErrorCollector.lo
CXX specfunc.lo
CXX statistics.lo
CXX statistics_chain.lo
CXX statistics_cluster.lo
CXX statistics_correlation.lo
CXX statistics_fluid.lo
CXX statistics_molecule.lo
CXX statistics_observable.lo
CXX statistics_wallstuff.lo
CXX thermostat.lo
CXX topology.lo
CXX tuning.lo
CXX uwerr.lo
CXX verlet.lo
CXX virtual_sites.lo
CXX virtual_sites_com.lo
CXX virtual_sites_relative.lo
CXX vmdsock.lo
CXX ghmc.lo
CXX integrate_sd.lo
CXX EspressoSystemInterface.lo
In file included from EspressoSystemInterface.hpp:24:0,
from EspressoSystemInterface.cpp:19:
debug.hpp:36:27: warning: '__malloc' initialized and declared 'extern' [enabled
by default]
#define malloc(s) __malloc((s),__FILE__, __LINE__)
^
debug.hpp:36:27: error: 'void* __malloc' redeclared as different kind of symbol
debug.hpp:48:7: error: previous declaration of 'void* __malloc(unsigned int,
const char*, int)'
void *__malloc(unsigned int size, const char *where, int line);
^
/usr/include/stdlib.h:466:14: error: expected primary-expression before '__size'
extern void *malloc (size_t __size) __THROW __attribute_malloc__ __wur;
^
/usr/include/stdlib.h:466:14: error: expected ')' before '__size'
debug.hpp:35:31: warning: '__realloc' initialized and declared 'extern'
[enabled by default]
#define realloc(v,s) __realloc((v),(s),__FILE__, __LINE__)
^
debug.hpp:35:31: error: 'void* __realloc' redeclared as different kind of symbol
debug.hpp:45:7: error: previous declaration of 'void* __realloc(void*, unsigned
int, const char*, int)'
void *__realloc(void *old, unsigned int size, const char *where, int line);
^
/usr/include/stdlib.h:480:14: error: expected primary-expression before 'void'
extern void *realloc (void *__ptr, size_t __size)
^
/usr/include/stdlib.h:480:14: error: expected ')' before 'void'
debug.hpp:37:23: error: variable or field '__free' declared void
#define free(v) __free((v),__FILE__, __LINE__)
^
/usr/include/stdlib.h:483:13: error: expected primary-expression before 'void'
extern void free (void *__ptr) __THROW;
^
/usr/include/stdlib.h:483:13: error: expected ')' before 'void'
In file included from /usr/include/c++/4.8/bits/stl_algo.h:59:0,
from /usr/include/c++/4.8/algorithm:62,
from Vector.hpp:19,
from SystemInterface.hpp:22,
from EspressoSystemInterface.hpp:25,
from EspressoSystemInterface.cpp:19:
/usr/include/c++/4.8/cstdlib:136:11: error: '::free' has not been declared
using ::free;
^
/usr/include/c++/4.8/cstdlib:140:11: error: '::malloc' has not been declared
using ::malloc;
^
/usr/include/c++/4.8/cstdlib:153:11: error: '::realloc' has not been declared
using ::realloc;
^
make[4]: *** [EspressoSystemInterface.lo] Error 1
make[4]: *** Waiting for unfinished jobs....
make[4]: Leaving directory
`<http://espressomd.org/jenkins/job/master-nightly-debug/ws/src/core'>
make[3]: *** [all] Error 2
make[3]: Leaving directory
`<http://espressomd.org/jenkins/job/master-nightly-debug/ws/src/core'>
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory
`<http://espressomd.org/jenkins/job/master-nightly-debug/ws/src'>
make[1]: *** [all] Error 2
make[1]: Leaving directory
`<http://espressomd.org/jenkins/job/master-nightly-debug/ws/src'>
make: *** [all-recursive] Error 1
Build step 'Execute shell' marked build as failure
[WARNINGS] Skipping publisher since build result is FAILURE
Archiving artifacts