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[Espressomd-maintainer] Build failed in Jenkins: master-nightly-distchec
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From: |
Jenkins Demon |
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Subject: |
[Espressomd-maintainer] Build failed in Jenkins: master-nightly-distcheck #230 |
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Date: |
Mon, 29 Jun 2015 20:05:15 +0200 (CEST) |
See <http://espressomd.org/jenkins/job/master-nightly-distcheck/230/changes>
Changes:
[Florian Weik] Class for calculatingn running average and variance.
[Florian Weik] Python: Baseclass for magnetostatic ia, direct summation methods
on cpu
[Florian Weik] Python: Extended error message for missing kwargs in actors
[Florian Weik] Python: Separated out shared code for charge and dipolar p3m
into p3m_common.pxd
[Florian Weik] Python: Actor corrected error msg
[Florian Weik] Python: Interface to dipolar p3m
[Florian Weik] python: magnetostatic layer correction method
[Florian Weik] Autopep8.
------------------------------------------
[...truncated 1228 lines...]
CXX angle_cossquare_tcl.lo
CXX angledist_tcl.lo
CXX dihedral_tcl.lo
CXX endangledist_tcl.lo
CXX fene_tcl.lo
CXX harmonic_dumbbell_tcl.lo
CXX harmonic_tcl.lo
CXX quartic_tcl.lo
CXX bonded_coulomb_tcl.lo
CXX overlap_tcl.lo
CXX subt_lj_tcl.lo
CXX umbrella_tcl.lo
CXX object-in-fluid/area_force_local_tcl.lo
CXX object-in-fluid/area_force_global_tcl.lo
CXX object-in-fluid/bending_force_tcl.lo
CXX object-in-fluid/stretching_force_tcl.lo
CXX object-in-fluid/stretchlin_force_tcl.lo
CXX object-in-fluid/volume_force_tcl.lo
CXX immersed_boundary/ibm_triel_tcl.lo
CXX immersed_boundary/ibm_volume_conservation_tcl.lo
CXX immersed_boundary/ibm_tribend_tcl.lo
CXX debye_hueckel_tcl.lo
CXX elc_tcl.lo
CXX magnetic_non_p3m_methods_tcl.lo
CXX maggs_tcl.lo
CXX mmm1d_tcl.lo
CXX mmm2d_tcl.lo
CXX p3m-dipolar_tcl.lo
CXX p3m_tcl.lo
CXX reaction_field_tcl.lo
CXX mdlc_correction_tcl.lo
CXX actor/Mmm1dgpu_tcl.lo
CXX actor/Ewaldgpu_tcl.lo
CXX actor/HarmonicWell_tcl.lo
CXX actor/HarmonicOrientationWell_tcl.lo
CXX cuda_init_tcl.lo
CXXLD libEspressoTcl.la
CXX libEspressoTcl4Py_la-scriptsdir.lo
CXXLD libEspressoTcl4Py.la
CXX Espresso_install-scriptsdir.o
CXX Espresso_install-main.o
NVCC cuda_workaround.o
CXXLD Espresso.install
CXX Espresso-scriptsdir.o
CXX Espresso-main.o
CXXLD Espresso
make[4]: Leaving directory
`<http://espressomd.org/jenkins/job/master-nightly-distcheck/ws/espresso-3.4-dev-1056-g9ce9f86/_build/src/tcl'>
Making all in python/espressomd
make[4]: Entering directory
`<http://espressomd.org/jenkins/job/master-nightly-distcheck/ws/espresso-3.4-dev-1056-g9ce9f86/_build/src/python/espressomd'>
GEN gen_pxiconfig.cpp
Reading definitions from ../../../../src/features.def...
Done.
Writing gen_pxiconfig.cpp...
Done.
CXXLD gen_pxiconfig
GEN myconfig.pxi
make all-am
make[5]: Entering directory
`<http://espressomd.org/jenkins/job/master-nightly-distcheck/ws/espresso-3.4-dev-1056-g9ce9f86/_build/src/python/espressomd'>
CXX dummy.o
CXXLD dummy
GEN python-all
CYTHON _init.cpp
CXX _init.lo
CXXLD _init.la
GEN _init.so
CYTHON _system.cpp
CXX _system.lo
CXXLD _system.la
GEN _system.so
CYTHON actors.cpp
CXX actors.lo
CXXLD actors.la
GEN actors.so
CYTHON analyze.cpp
CXX analyze.lo
In file included from
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1804:0,
from
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17,
from
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from analyze.cpp:250:
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2:
warning: #warning "Using deprecated NumPy API, disable it by " "#defining
NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it by " \
^
In file included from
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:26:0,
from
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from analyze.cpp:250:
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1629:1:
warning: 'int _import_array()' defined but not used [-Wunused-function]
_import_array(void)
^
In file included from
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ufuncobject.h:317:0,
from analyze.cpp:251:
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/__ufunc_api.h:241:1:
warning: 'int _import_umath()' defined but not used [-Wunused-function]
_import_umath(void)
^
CXXLD analyze.la
GEN analyze.so
CYTHON cellsystem.cpp
CXX cellsystem.lo
CXXLD cellsystem.la
GEN cellsystem.so
CYTHON code_info.cpp
CXX code_info.lo
CXXLD code_info.la
GEN code_info.so
CYTHON cuda_init.cpp
CXX cuda_init.lo
CXXLD cuda_init.la
GEN cuda_init.so
CYTHON debye_hueckel.cpp
CXX debye_hueckel.lo
CXXLD debye_hueckel.la
GEN debye_hueckel.so
CYTHON electrostatic_extensions.cpp
CXX electrostatic_extensions.lo
In file included from
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1804:0,
from
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17,
from
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from electrostatic_extensions.cpp:251:
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2:
warning: #warning "Using deprecated NumPy API, disable it by " "#defining
NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it by " \
^
In file included from
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:26:0,
from
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from electrostatic_extensions.cpp:251:
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1629:1:
warning: 'int _import_array()' defined but not used [-Wunused-function]
_import_array(void)
^
In file included from
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ufuncobject.h:317:0,
from electrostatic_extensions.cpp:252:
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/__ufunc_api.h:241:1:
warning: 'int _import_umath()' defined but not used [-Wunused-function]
_import_umath(void)
^
CXXLD electrostatic_extensions.la
GEN electrostatic_extensions.so
CYTHON electrostatics.cpp
CXX electrostatics.lo
In file included from
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1804:0,
from
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17,
from
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from electrostatics.cpp:251:
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2:
warning: #warning "Using deprecated NumPy API, disable it by " "#defining
NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it by " \
^
In file included from
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:26:0,
from
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from electrostatics.cpp:251:
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1629:1:
warning: 'int _import_array()' defined but not used [-Wunused-function]
_import_array(void)
^
In file included from
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ufuncobject.h:317:0,
from electrostatics.cpp:252:
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/__ufunc_api.h:241:1:
warning: 'int _import_umath()' defined but not used [-Wunused-function]
_import_umath(void)
^
CXXLD electrostatics.la
GEN electrostatics.so
CYTHON integrate.cpp
CXX integrate.lo
In file included from
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1804:0,
from
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17,
from
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from integrate.cpp:259:
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2:
warning: #warning "Using deprecated NumPy API, disable it by " "#defining
NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it by " \
^
In file included from
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:26:0,
from
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from integrate.cpp:259:
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1629:1:
warning: 'int _import_array()' defined but not used [-Wunused-function]
_import_array(void)
^
In file included from
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ufuncobject.h:317:0,
from integrate.cpp:260:
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/__ufunc_api.h:241:1:
warning: 'int _import_umath()' defined but not used [-Wunused-function]
_import_umath(void)
^
integrate.cpp:5247:18: warning: 'PyObject* __Pyx_Import(PyObject*, PyObject*,
int)' defined but not used [-Wunused-function]
static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level) {
^
CXXLD integrate.la
GEN integrate.so
CYTHON interactions.cpp
CXX interactions.lo
In file included from
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1804:0,
from
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17,
from
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from interactions.cpp:251:
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2:
warning: #warning "Using deprecated NumPy API, disable it by " "#defining
NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it by " \
^
In file included from
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:26:0,
from
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from interactions.cpp:251:
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1629:1:
warning: 'int _import_array()' defined but not used [-Wunused-function]
_import_array(void)
^
In file included from
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ufuncobject.h:317:0,
from interactions.cpp:252:
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/__ufunc_api.h:241:1:
warning: 'int _import_umath()' defined but not used [-Wunused-function]
_import_umath(void)
^
interactions.cpp:26026:18: warning: 'PyObject* __Pyx_Import(PyObject*,
PyObject*, int)' defined but not used [-Wunused-function]
static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level) {
^
CXXLD interactions.la
GEN interactions.so
CYTHON magnetostatics.cpp
Error compiling Cython file:
------------------------------------------------------------
...
of the class."""
if "bjerrum_length" in self._params:
if temperature == 0:
raise Exception(
"Bjerrum length is not defined, if temperature is zero")
if dipolar_set_Dbjerrum(self._params["bjerrum_length"]):
^
------------------------------------------------------------
<http://espressomd.org/jenkins/job/master-nightly-distcheck/ws/espresso-3.4-dev-1056-g9ce9f86/src/python/espressomd/magnetostatics.pyx>:47:35:
undeclared name not builtin: dipolar_set_Dbjerrum
Error compiling Cython file:
------------------------------------------------------------
...
def getParams(self):
self._params = self._getParamsFromEsCore()
return self._params
def _getActiveMethodFromEsCore(self):
return coulomb.Dmethod
^
------------------------------------------------------------
<http://espressomd.org/jenkins/job/master-nightly-distcheck/ws/espresso-3.4-dev-1056-g9ce9f86/src/python/espressomd/magnetostatics.pyx>:63:22:
undeclared name not builtin: coulomb
make[5]: *** [magnetostatics.cpp] Error 1
make[5]: Leaving directory
`<http://espressomd.org/jenkins/job/master-nightly-distcheck/ws/espresso-3.4-dev-1056-g9ce9f86/_build/src/python/espressomd'>
make[4]: *** [all] Error 2
make[4]: Leaving directory
`<http://espressomd.org/jenkins/job/master-nightly-distcheck/ws/espresso-3.4-dev-1056-g9ce9f86/_build/src/python/espressomd'>
make[3]: *** [all-recursive] Error 1
make[3]: Leaving directory
`<http://espressomd.org/jenkins/job/master-nightly-distcheck/ws/espresso-3.4-dev-1056-g9ce9f86/_build/src'>
make[2]: *** [all] Error 2
make[2]: Leaving directory
`<http://espressomd.org/jenkins/job/master-nightly-distcheck/ws/espresso-3.4-dev-1056-g9ce9f86/_build/src'>
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory
`<http://espressomd.org/jenkins/job/master-nightly-distcheck/ws/espresso-3.4-dev-1056-g9ce9f86/_build'>
make: *** [distcheck] Error 1
+ exit 1
Build step 'Execute shell' marked build as failure
[WARNINGS] Skipping publisher since build result is FAILURE
Archiving artifacts
- [Espressomd-maintainer] Build failed in Jenkins: master-nightly-distcheck #230,
Jenkins Demon <=