[Espressomd-maintainer] Build failed in Jenkins: master-python-interface #371

[Jenkins Demon]

See <http://espressomd.org/jenkins/job/master-python-interface/371/changes>

Changes:

[Florian Weik] Class for calculatingn running average and variance.

[Florian Weik] Python: Baseclass for magnetostatic ia, direct summation methods 
on cpu

[Florian Weik] Python: Extended error message for missing kwargs in actors

[Florian Weik] Python: Separated out shared code for charge and dipolar p3m 
into p3m_common.pxd

[Florian Weik] Python: Actor corrected error msg

[Florian Weik] Python: Interface to dipolar p3m

[Florian Weik] python: magnetostatic layer correction method

[Florian Weik] Autopep8.

------------------------------------------
[...truncated 534 lines...]
  CXX      object-in-fluid/stretching_force.lo
  CXX      object-in-fluid/stretchlin_force.lo
  CXX      object-in-fluid/volume_force.lo
  CXX      hydrogen_bond.lo
  CXX      twist_stack.lo
  CXX      immersed_boundary/ibm_main.lo
  CXX      immersed_boundary/ibm_triel.lo
  CXX      immersed_boundary/ibm_volume_conservation.lo
  CXX      immersed_boundary/ibm_tribend.lo
  CXX      immersed_boundary/ibm_cuda_interface.lo
  CXX      debye_hueckel.lo
  CXX      elc.lo
  CXX      magnetic_non_p3m_methods.lo
  CXX      mdlc_correction.lo
  CXX      maggs.lo
  CXX      mmm1d.lo
  CXX      mmm2d.lo
  CXX      mmm-common.lo
  CXX      p3m.lo
  CXX      p3m-common.lo
  CXX      p3m-dipolar.lo
  CXX      reaction_field.lo
  CXX      actor/ActorList.lo
  CXX      actor/HarmonicWell.lo
  CXX      actor/HarmonicOrientationWell.lo
  CXX      actor/Mmm1dgpuForce.lo
  CXX      actor/EwaldgpuForce.lo
  GEN      config-version.cpp
  CXX      config-version.lo
  NVCC     cuda_init_cuda.lo
  NVCC     cuda_common_cuda.lo
  NVCC     electrokinetics_cuda.lo
  NVCC     fd-electrostatics_cuda.lo
  NVCC     lbgpu_cuda.lo
  NVCC     p3m_gpu_cuda.lo
  NVCC     EspressoSystemInterface_cuda.lo
  NVCC     integrate_sd_cuda.lo
  NVCC     integrate_sd_cuda_kernel.lo
  NVCC     integrate_sd_cuda_debug.lo
  NVCC     integrate_sd_matrix.lo
  NVCC     integrate_sd_cuda_device.lo
  NVCC     actor/Mmm1dgpuForce_cuda.lo
  NVCC     actor/EwaldgpuForce_cuda.lo
  NVCC     actor/HarmonicWell_cuda.lo
  NVCC     actor/HarmonicOrientationWell_cuda.lo
  NVCC     immersed_boundary/ibm_cuda.lo
  CXXLD    libEspresso.la
make[4]: Leaving directory 
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make[3]: Leaving directory 
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Making all in python/espressomd
make[3]: Entering directory 
`<http://espressomd.org/jenkins/job/master-python-interface/ws/src/python/espressomd'>
  GEN      gen_pxiconfig.cpp
Reading definitions from ../../../src/features.def...
Done.
Writing gen_pxiconfig.cpp...
Done.
  CXXLD    gen_pxiconfig
  GEN      myconfig.pxi
make  all-am
make[4]: Entering directory 
`<http://espressomd.org/jenkins/job/master-python-interface/ws/src/python/espressomd'>
  CXX      dummy.o
  CXXLD    dummy
  GEN      python-all
  CYTHON   _init.cpp
  CXX      _init.lo
  CXXLD    _init.la
  GEN      _init.so
  CYTHON   _system.cpp
  CXX      _system.lo
  CXXLD    _system.la
  GEN      _system.so
  CYTHON   actors.cpp
  CXX      actors.lo
  CXXLD    actors.la
  GEN      actors.so
  CYTHON   analyze.cpp
  CXX      analyze.lo
In file included from 
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1804:0,
                 from 
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17,
                 from 
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
                 from analyze.cpp:250:
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2:
 warning: #warning "Using deprecated NumPy API, disable it by " "#defining 
NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
 #warning "Using deprecated NumPy API, disable it by " \
  ^
In file included from 
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:26:0,
                 from 
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
                 from analyze.cpp:250:
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1629:1:
 warning: 'int _import_array()' defined but not used [-Wunused-function]
 _import_array(void)
 ^
In file included from 
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ufuncobject.h:317:0,
                 from analyze.cpp:251:
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/__ufunc_api.h:241:1:
 warning: 'int _import_umath()' defined but not used [-Wunused-function]
 _import_umath(void)
 ^
  CXXLD    analyze.la
  GEN      analyze.so
  CYTHON   cellsystem.cpp
  CXX      cellsystem.lo
  CXXLD    cellsystem.la
  GEN      cellsystem.so
  CYTHON   code_info.cpp
  CXX      code_info.lo
  CXXLD    code_info.la
  GEN      code_info.so
  CYTHON   cuda_init.cpp
  CXX      cuda_init.lo
  CXXLD    cuda_init.la
  GEN      cuda_init.so
  CYTHON   debye_hueckel.cpp
  CXX      debye_hueckel.lo
  CXXLD    debye_hueckel.la
  GEN      debye_hueckel.so
  CYTHON   electrostatic_extensions.cpp
  CXX      electrostatic_extensions.lo
In file included from 
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1804:0,
                 from 
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17,
                 from 
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
                 from electrostatic_extensions.cpp:251:
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2:
 warning: #warning "Using deprecated NumPy API, disable it by " "#defining 
NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
 #warning "Using deprecated NumPy API, disable it by " \
  ^
In file included from 
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:26:0,
                 from 
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
                 from electrostatic_extensions.cpp:251:
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1629:1:
 warning: 'int _import_array()' defined but not used [-Wunused-function]
 _import_array(void)
 ^
In file included from 
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ufuncobject.h:317:0,
                 from electrostatic_extensions.cpp:252:
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/__ufunc_api.h:241:1:
 warning: 'int _import_umath()' defined but not used [-Wunused-function]
 _import_umath(void)
 ^
  CXXLD    electrostatic_extensions.la
  GEN      electrostatic_extensions.so
  CYTHON   electrostatics.cpp
  CXX      electrostatics.lo
In file included from 
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1804:0,
                 from 
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17,
                 from 
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
                 from electrostatics.cpp:251:
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2:
 warning: #warning "Using deprecated NumPy API, disable it by " "#defining 
NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
 #warning "Using deprecated NumPy API, disable it by " \
  ^
In file included from 
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:26:0,
                 from 
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
                 from electrostatics.cpp:251:
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1629:1:
 warning: 'int _import_array()' defined but not used [-Wunused-function]
 _import_array(void)
 ^
In file included from 
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ufuncobject.h:317:0,
                 from electrostatics.cpp:252:
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/__ufunc_api.h:241:1:
 warning: 'int _import_umath()' defined but not used [-Wunused-function]
 _import_umath(void)
 ^
  CXXLD    electrostatics.la
  GEN      electrostatics.so
  CYTHON   integrate.cpp
  CXX      integrate.lo
In file included from 
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1804:0,
                 from 
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17,
                 from 
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
                 from integrate.cpp:259:
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2:
 warning: #warning "Using deprecated NumPy API, disable it by " "#defining 
NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
 #warning "Using deprecated NumPy API, disable it by " \
  ^
In file included from 
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:26:0,
                 from 
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
                 from integrate.cpp:259:
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1629:1:
 warning: 'int _import_array()' defined but not used [-Wunused-function]
 _import_array(void)
 ^
In file included from 
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ufuncobject.h:317:0,
                 from integrate.cpp:260:
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/__ufunc_api.h:241:1:
 warning: 'int _import_umath()' defined but not used [-Wunused-function]
 _import_umath(void)
 ^
integrate.cpp:5247:18: warning: 'PyObject* __Pyx_Import(PyObject*, PyObject*, 
int)' defined but not used [-Wunused-function]
 static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level) {
                  ^
  CXXLD    integrate.la
  GEN      integrate.so
  CYTHON   interactions.cpp
  CXX      interactions.lo
In file included from 
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1804:0,
                 from 
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17,
                 from 
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
                 from interactions.cpp:251:
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2:
 warning: #warning "Using deprecated NumPy API, disable it by " "#defining 
NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
 #warning "Using deprecated NumPy API, disable it by " \
  ^
In file included from 
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:26:0,
                 from 
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
                 from interactions.cpp:251:
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1629:1:
 warning: 'int _import_array()' defined but not used [-Wunused-function]
 _import_array(void)
 ^
In file included from 
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ufuncobject.h:317:0,
                 from interactions.cpp:252:
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/__ufunc_api.h:241:1:
 warning: 'int _import_umath()' defined but not used [-Wunused-function]
 _import_umath(void)
 ^
interactions.cpp:26026:18: warning: 'PyObject* __Pyx_Import(PyObject*, 
PyObject*, int)' defined but not used [-Wunused-function]
 static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level) {
                  ^
  CXXLD    interactions.la
  GEN      interactions.so
  CYTHON   magnetostatics.cpp

Error compiling Cython file:
------------------------------------------------------------
...
           of the class."""
        if "bjerrum_length" in self._params:
            if temperature == 0:
                raise Exception(
                    "Bjerrum length is not defined, if temperature is zero")
            if dipolar_set_Dbjerrum(self._params["bjerrum_length"]):
                                  ^
------------------------------------------------------------

magnetostatics.pyx:47:35: undeclared name not builtin: dipolar_set_Dbjerrum

Error compiling Cython file:
------------------------------------------------------------
...
    def getParams(self):
        self._params = self._getParamsFromEsCore()
        return self._params

    def _getActiveMethodFromEsCore(self):
        return coulomb.Dmethod
                     ^
------------------------------------------------------------

magnetostatics.pyx:63:22: undeclared name not builtin: coulomb
make[4]: *** [magnetostatics.cpp] Error 1
make[4]: Leaving directory 
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make[3]: *** [all] Error 2
make[3]: Leaving directory 
`<http://espressomd.org/jenkins/job/master-python-interface/ws/src/python/espressomd'>
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory 
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make[1]: *** [all] Error 2
make[1]: Leaving directory 
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make: *** [all-recursive] Error 1
+ exit 1
Build step 'Execute shell' marked build as failure
[WARNINGS] Skipping publisher since build result is FAILURE
Archiving artifacts