[Espressomd-maintainer] Build failed in Jenkins: master-doc #419

[Jenkins Demon]

See <http://espressomd.org/jenkins/job/master-doc/419/changes>

Changes:

[Rudolf Weeber] Work dipoles and rotational properties in system interface and 
on dipolar direct sum on gpu

[Rudolf Weeber] More work on dipolar direct sum and dipoles in system interface

[Rudolf Weeber] Python: compile with lj interaction disabled

[Rudolf Weeber] The various "analyze set" commands to change the topology 
information now imply a synchronization of the topology across nodes

[Rudolf Weeber] More work on dipolar direct sum on gpu

[Rudolf Weeber] System interface, torques and dipoles

[Rudolf Weeber] Dipolar Direct sum on the gpu + Fixes to system interface

[Rudolf Weeber] Corrections for dipolar direct sum on gpu

[Rudolf Weeber] More fixes to dipolar direct sum on gpu

[Rudolf Weeber] More work on dds on gpu

[Rudolf Weeber] Comment bond deleting cdoe

[Rudolf Weeber] Tentative implementation for rotating system around center of 
mass

[Rudolf Weeber] Tell bond type in "unknwon bond type" error

[Rudolf Weeber] Petmit setting of zero-length dipoles. Is needed to make 
blockfiles with mixed magnetic-nonmagnetic systems working

[Rudolf Weeber] Allow virtual_sites_relative particles to rotate. Virtual sites 
relative no longer use the quaternion attirbute

[Rudolf Weeber] Fix part print vs_relative

[Rudolf Weeber] vs_auto_relate_to with a particle distance of zero

[Rudolf Weeber] Testcase for rotating virtual sites

[Rudolf Weeber] Duplicate code in virtual sites test case

[Rudolf Weeber] Rotation per particle can now be switched per individual 
carthesian axis

[Rudolf Weeber] Test case for rotating of vs_relative which actually tests

[Rudolf Weeber] Correction to rotation of vs_relative and block file support 
for rotating vs and switchable_rotation

[Rudolf Weeber] Blockfile support for dipm

[Rudolf Weeber] work on rotate_system. Still incomplete

[Rudolf Weeber] Rotate_system corrections, testcase, doc; News update: 
vs_relatie rotation, rotation_per_particle, rotate_system

[Rudolf Weeber] Doc update virtual sites

[Rudolf Weeber] Bugfix rotate_system (missing on_particle_change())

[Rudolf Weeber] Comment bond deleting cdoe

[Rudolf Weeber] Tentative implementation for rotating system around center of 
mass

[Rudolf Weeber] Tell bond type in "unknwon bond type" error

[Rudolf Weeber] Petmit setting of zero-length dipoles. Is needed to make 
blockfiles with mixed magnetic-nonmagnetic systems working

[Rudolf Weeber] Allow virtual_sites_relative particles to rotate. Virtual sites 
relative no longer use the quaternion attirbute

[Rudolf Weeber] Fix part print vs_relative

[Rudolf Weeber] vs_auto_relate_to with a particle distance of zero

[Rudolf Weeber] Testcase for rotating virtual sites

[Rudolf Weeber] Duplicate code in virtual sites test case

[Rudolf Weeber] Rotation per particle can now be switched per individual 
carthesian axis

[Rudolf Weeber] Test case for rotating of vs_relative which actually tests

[Rudolf Weeber] Correction to rotation of vs_relative and block file support 
for rotating vs and switchable_rotation

[Rudolf Weeber] Blockfile support for dipm

[Rudolf Weeber] work on rotate_system. Still incomplete

[Rudolf Weeber] Rotate_system corrections, testcase, doc; News update: 
vs_relatie rotation, rotation_per_particle, rotate_system

[Rudolf Weeber] Doc update virtual sites

[Rudolf Weeber] Bugfix rotate_system (missing on_particle_change())

[Rudolf Weeber] mplemented the TABANGLEMINUS vot rabulated angle potentials 
also for energy calculation

[Rudolf Weeber] Steepest descent energy minimization for rotational degree of 
freedom

[Rudolf Weeber] Report nan-valued torques correctly

[Rudolf Weeber] Dipolar direct summation on the gup: energy

[Rudolf Weeber] rotate_system: resort particles rather than on_particle_change 
at the end

[Rudolf Weeber] Corrections to dipolar direct sum on gpu energy

[Rudolf Weeber] More merging

[Rudolf Weeber] Still more merging

[Rudolf Weeber] Fixes to dipolar direct sum on gpu

[Rudolf Weeber] Docs dds on gpu

[Rudolf Weeber] Correction to minimize_energy w rotation, matched testcase to 
code

[Rudolf Weeber] Minimize_energy: Corrected fixing of single rotational 
coordinates

[Rudolf Weeber] Indentation

[Rudolf Weeber] Fix storage allocation for dipoles in EspressoSystemInterface

[Rudolf Weeber] Misplaced register_command in tcl initialization

[Rudolf Weeber] Remove debug output

[Rudolf Weeber] NEWS

[Rudolf Weeber] Updated testcases for mass-and-rinertia and for 
virtual-sites-rotation so they use the same parameters

[Rudolf Weeber] Whitespace in Makefile.am

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*                  Checking for Python                         *
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checking for a Python interpreter with version >= 2.5... python
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config.status: creating testsuite/runtest.sh
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****************************************************************
*                   Configuration summary                      *
****************************************************************
platform detected       = x86_64-suse-linux-gnu
package version         = 3.4-dev-1220-gffd248a
development sources     = yes

Compiler
--------
compiler                = mpic++
linker                  = /usr/x86_64-suse-linux/bin/ld -m elf_x86_64
c++ compiler flags      = -Wall -O3 
c++ preprocessor flags  =  -I/usr/local/cuda/include
linker flags            =  -L/usr/local/cuda/lib64
libraries               = -lhdf5 -ltcl8.6 -lcurand -lcublas -lcufft -lcudart 
-lfftw3  -lm
using debug flags       = 
using profiling flags   = 

cython complier         = 
cython preproc flags    = 


Libraries
---------
FFTW                    = yes
efence                  = no

Cuda
----
CUDA compiler           = /usr/local/cuda/bin/nvcc
CUDA flags              =  --ptxas-options=-v -gencode 
arch=compute_20,code=compute_20

Tcl/Tk
------
Tcl version             = tcl8.6
Tk version              = none

Python
------
python                  = /usr/bin/python -B
build python interface  = 

Other settings
--------------
config                  = myconfig.hpp
installation prefix     = /home/jenkins/Espresso
number of test tasks    = 8
mympiexec               = 
<http://espressomd.org/jenkins/job/master-doc/ws/mympiexec.sh>
mpiexec                 = /usr/lib64/mpi/gcc/openmpi/bin/mpiexec
pdflatex                = /usr/bin/pdflatex
makeindex               = /usr/bin/makeindex
bibtex                  = /usr/bin/bibtex
doxygen                 = /usr/bin/doxygen
dot                     = /usr/bin/dot

Not building Python interface.
END CONFIGURE
<http://espressomd.org/jenkins/job/master-doc/ws/>
+ maintainer/jenkins/doc.sh
19598 (process ID) old priority 0, new priority 5
  srcdir=<http://espressomd.org/jenkins/job/master-doc/ws/>
  builddir=<http://espressomd.org/jenkins/job/master-doc/ws/>
  insource=true
<http://espressomd.org/jenkins/job/master-doc/ws/> 
<http://espressomd.org/jenkins/job/master-doc/ws/>
START DOC
>make doc
cd doc; make --print-directory doc
make[1]: Entering directory 
`<http://espressomd.org/jenkins/job/master-doc/ws/doc'>
cd ug; make --print-directory ug
make[2]: Entering directory 
`<http://espressomd.org/jenkins/job/master-doc/ws/doc/ug'>
Assembling quickref.inp..
Running LaTeX..
sh ../latexit.sh . ug
TEXINPUTS=.:.:<http://espressomd.org/jenkins/job/master-doc/ws/doc>:
ESPRESSO_VERSION=3.4-dev-1220-gffd248a
Running LaTeX stage 1...
This is pdfTeX, Version 3.1415926-2.5-1.40.14 (TeX Live 2013/TeX Live for SUSE 
Linux)
 restricted \write18 enabled.
entering extended mode
ERROR: LaTeX stage 1 failed.
These are the last 20 lines of ug.log:
--------------------------------------------
 []

)
Runaway argument?
{n] \var {d} \var {q} \end {essyntaxbox} where n is the id of the non\ETC.
! File ended while scanning use of \var.
<inserted text> 
                \par 
l.324 \include{part}
                     
Here is how much of TeX's memory you used:
 24098 strings out of 493315
 431864 string characters out of 6145892
 536855 words of memory out of 5000000
 27005 multiletter control sequences out of 15000+600000
 15617 words of font info for 58 fonts, out of 8000000 for 9000
 957 hyphenation exceptions out of 8191
 66i,12n,76p,479b,675s stack positions out of 5000i,500n,10000p,200000b,80000s

!  ==> Fatal error occurred, no output PDF file produced!
--------------------------------------------
make[2]: *** [ug.pdf] Error 1
make[2]: Leaving directory 
`<http://espressomd.org/jenkins/job/master-doc/ws/doc/ug'>
make[1]: *** [ug] Error 2
make[1]: Leaving directory 
`<http://espressomd.org/jenkins/job/master-doc/ws/doc'>
make: *** [doc] Error 2
Build step 'Execute shell' marked build as failure
[WARNINGS] Skipping publisher since build result is FAILURE
Archiving artifacts