[Espressomd-maintainer] Build failed in Jenkins: master-doc #420

[Jenkins Demon]

See <http://espressomd.org/jenkins/job/master-doc/420/changes>

Changes:

[Florian Weik] Added class to keep running average and variance.

[Florian Weik] Added new class to build system.

------------------------------------------
[...truncated 162 lines...]
checking limits.h presence... yes
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checking netdb.h usability... yes
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checking netinet/in.h usability... yes
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checking stddef.h usability... yes
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checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
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checking sys/time.h usability... yes
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checking for unistd.h... (cached) yes
****************************************************************
*               Checking for standard functions                *
****************************************************************
checking for stdlib.h... (cached) yes
checking for GNU libc compatible malloc... yes
checking for working memcmp... yes
checking for stdlib.h... (cached) yes
checking for GNU libc compatible realloc... yes
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checking types of arguments for select... int,fd_set *,struct timeval *
checking for size_t... yes
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checking for socket... yes
checking for sqrt... yes
****************************************************************
*         Checking for required tools and libraries            *
****************************************************************
checking whether to use FFTW... yes
checking for libfftw3... yes
checking for fftw3.h... yes
checking whether to use CUDA... yes
checking for nvcc... /usr/local/cuda/bin/nvcc
checking if /usr/local/cuda/bin/nvcc supports -c -o file.o... no
checking if /usr/local/cuda/bin/nvcc supports -c -o file.o... (cached) no
checking whether the /usr/local/cuda/bin/nvcc linker 
(/usr/x86_64-suse-linux/bin/ld -m elf_x86_64) supports shared libraries... yes
checking how to hardcode library paths into programs... immediate
checking for libcudart... yes
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checking whether CUDA runs... yes
checking whether the compiler accepts -stdlib=libstdc++... no
checking whether to use MAGMA... guess
checking for library containing magma_init... no
configure: WARNING: MAGMA not found. Some features will not be available!
checking whether to use ARPACK... guess
checking for libarpack... no
configure: WARNING: could not find ARPACK library. Some features will not be 
available!
configure: WARNING: ARPACK not found. Some features will not be available!
****************************************************************
*                  Checking for Python                         *
****************************************************************
checking for a Python interpreter with version >= 2.5... python
checking for python... /usr/bin/python
checking for python version... 2.7
checking for python platform... linux2
checking for python script directory... ${prefix}/lib/python2.7/site-packages
checking for python extension module directory... 
${exec_prefix}/lib64/python2.7/site-packages
checking whether python -B works... yes
checking whether the python interface is wanted... no
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*                  Checking for Tcl/Tk                         *
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checking whether to build the Tcl interface... yes
checking for libtcl8.6... yes
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checking whether to use Tk... yes
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*                          h5md                                *
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checking whether to build with h5md support... yes
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*                   Other settings                             *
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checking whether to use efence... no
checking whether the variable MYCONFIG is set... no
checking the number of available CPUs... 8 
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*                   Creating output files                      *
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checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating config/Makefile
config.status: creating config/myconfig-sample-header.hpp
config.status: creating src/Makefile
config.status: creating src/core/Makefile
config.status: creating src/tcl/Makefile
config.status: creating src/python/espressomd/Makefile
config.status: creating tools/Makefile
config.status: creating scripts/Makefile
config.status: creating testsuite/Makefile
config.status: creating doc/Makefile
config.status: creating doc/logo/Makefile
config.status: creating doc/ug/Makefile
config.status: creating doc/dg/Makefile
config.status: creating doc/doxygen/Makefile
config.status: creating doc/tutorials/Makefile
config.status: creating doc/tutorials/01-lennard_jones/Makefile
config.status: creating doc/tutorials/02-charged_system/Makefile
config.status: creating doc/tutorials/03-object_in_fluid/Makefile
config.status: creating doc/latexit.sh
config.status: creating testsuite/runtest.sh
config.status: creating tools/es_mpiexec
config.status: creating src/python/pypresso
config.status: creating src/acconfig.hpp
config.status: executing depfiles commands
config.status: executing libtool commands
config.status: executing myconfig-sample.hpp commands
****************************************************************
*                   Configuration summary                      *
****************************************************************
platform detected       = x86_64-suse-linux-gnu
package version         = 3.4-dev-1222-geeaa531
development sources     = yes

Compiler
--------
compiler                = mpic++
linker                  = /usr/x86_64-suse-linux/bin/ld -m elf_x86_64
c++ compiler flags      = -Wall -O3 
c++ preprocessor flags  =  -I/usr/local/cuda/include
linker flags            =  -L/usr/local/cuda/lib64
libraries               = -lhdf5 -ltcl8.6 -lcurand -lcublas -lcufft -lcudart 
-lfftw3  -lm
using debug flags       = 
using profiling flags   = 

cython complier         = 
cython preproc flags    = 


Libraries
---------
FFTW                    = yes
efence                  = no

Cuda
----
CUDA compiler           = /usr/local/cuda/bin/nvcc
CUDA flags              =  --ptxas-options=-v -gencode 
arch=compute_20,code=compute_20

Tcl/Tk
------
Tcl version             = tcl8.6
Tk version              = none

Python
------
python                  = /usr/bin/python -B
build python interface  = 

Other settings
--------------
config                  = myconfig.hpp
installation prefix     = /home/jenkins/Espresso
number of test tasks    = 8
mympiexec               = 
<http://espressomd.org/jenkins/job/master-doc/ws/mympiexec.sh>
mpiexec                 = /usr/lib64/mpi/gcc/openmpi/bin/mpiexec
pdflatex                = /usr/bin/pdflatex
makeindex               = /usr/bin/makeindex
bibtex                  = /usr/bin/bibtex
doxygen                 = /usr/bin/doxygen
dot                     = /usr/bin/dot

Not building Python interface.
END CONFIGURE
<http://espressomd.org/jenkins/job/master-doc/ws/>
+ maintainer/jenkins/doc.sh
24561 (process ID) old priority 0, new priority 5
  srcdir=<http://espressomd.org/jenkins/job/master-doc/ws/>
  builddir=<http://espressomd.org/jenkins/job/master-doc/ws/>
  insource=true
<http://espressomd.org/jenkins/job/master-doc/ws/> 
<http://espressomd.org/jenkins/job/master-doc/ws/>
START DOC
>make doc
cd doc; make --print-directory doc
make[1]: Entering directory 
`<http://espressomd.org/jenkins/job/master-doc/ws/doc'>
cd ug; make --print-directory ug
make[2]: Entering directory 
`<http://espressomd.org/jenkins/job/master-doc/ws/doc/ug'>
Assembling quickref.inp..
Running LaTeX..
sh ../latexit.sh . ug
TEXINPUTS=.:.:<http://espressomd.org/jenkins/job/master-doc/ws/doc>:
ESPRESSO_VERSION=3.4-dev-1222-geeaa531
Running LaTeX stage 1...
This is pdfTeX, Version 3.1415926-2.5-1.40.14 (TeX Live 2013/TeX Live for SUSE 
Linux)
 restricted \write18 enabled.
entering extended mode
ERROR: LaTeX stage 1 failed.
These are the last 20 lines of ug.log:
--------------------------------------------
 []

)
Runaway argument?
{n] \var {d} \var {q} \end {essyntaxbox} where n is the id of the non\ETC.
! File ended while scanning use of \var.
<inserted text> 
                \par 
l.324 \include{part}
                     
Here is how much of TeX's memory you used:
 24098 strings out of 493315
 431864 string characters out of 6145892
 536855 words of memory out of 5000000
 27005 multiletter control sequences out of 15000+600000
 15617 words of font info for 58 fonts, out of 8000000 for 9000
 957 hyphenation exceptions out of 8191
 66i,12n,76p,479b,675s stack positions out of 5000i,500n,10000p,200000b,80000s

!  ==> Fatal error occurred, no output PDF file produced!
--------------------------------------------
make[2]: *** [ug.pdf] Error 1
make[2]: Leaving directory 
`<http://espressomd.org/jenkins/job/master-doc/ws/doc/ug'>
make[1]: *** [ug] Error 2
make[1]: Leaving directory 
`<http://espressomd.org/jenkins/job/master-doc/ws/doc'>
make: *** [doc] Error 2
Build step 'Execute shell' marked build as failure
[WARNINGS] Skipping publisher since build result is FAILURE
Archiving artifacts