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[Espressomd-maintainer] Build failed in Jenkins: master-nightly-distchec


From: Jenkins Demon
Subject: [Espressomd-maintainer] Build failed in Jenkins: master-nightly-distcheck #309
Date: Sun, 28 Feb 2016 00:56:43 +0100 (CET)

See <http://espressomd.org/jenkins/job/master-nightly-distcheck/309/changes>

Changes:

[Florian Weik] cmake: Fix build w/o mpi.

------------------------------------------
[...truncated 1307 lines...]
  CXX      object-in-fluid/out_direction.lo
  CXX      hydrogen_bond.lo
  CXX      twist_stack.lo
  CXX      immersed_boundary/ibm_main.lo
  CXX      immersed_boundary/ibm_triel.lo
  CXX      immersed_boundary/ibm_volume_conservation.lo
  CXX      immersed_boundary/ibm_tribend.lo
  CXX      immersed_boundary/ibm_cuda_interface.lo
  CXX      debye_hueckel.lo
  CXX      elc.lo
  CXX      magnetic_non_p3m_methods.lo
  CXX      mdlc_correction.lo
  CXX      maggs.lo
  CXX      mmm1d.lo
  CXX      mmm2d.lo
  CXX      mmm-common.lo
  CXX      p3m.lo
  CXX      p3m-common.lo
  CXX      p3m-dipolar.lo
  CXX      reaction_field.lo
  CXX      actor/ActorList.lo
  CXX      actor/HarmonicWell.lo
  CXX      actor/HarmonicOrientationWell.lo
  CXX      actor/Mmm1dgpuForce.lo
  CXX      actor/EwaldGPU.lo
  CXX      actor/DipolarDirectSum.lo
  GEN      config-version.cpp
  CXX      config-version.lo
  NVCC     cuda_init_cuda.lo
  NVCC     cuda_common_cuda.lo
  NVCC     electrokinetics_cuda.lo
  NVCC     fd-electrostatics_cuda.lo
  NVCC     lbgpu_cuda.lo
  NVCC     p3m_gpu_cuda.lo
  NVCC     EspressoSystemInterface_cuda.lo
  NVCC     integrate_sd_cuda.lo
  NVCC     integrate_sd_cuda_kernel.lo
  NVCC     integrate_sd_cuda_debug.lo
  NVCC     integrate_sd_matrix.lo
  NVCC     integrate_sd_cuda_device.lo
  NVCC     actor/Mmm1dgpuForce_cuda.lo
  NVCC     actor/EwaldGPU_cuda.lo
  NVCC     actor/HarmonicWell_cuda.lo
  NVCC     immersed_boundary/ibm_cuda.lo
  NVCC     actor/DipolarDirectSum_cuda.lo
  NVCC     actor/HarmonicOrientationWell_cuda.lo
  NVCC     p3m_gpu_error_cuda.lo
  CXXLD    libEspresso.la
make[6]: Leaving directory 
'<http://espressomd.org/jenkins/job/master-nightly-distcheck/ws/espresso-3.4-dev-1867-gc2381f0/_build/src/core'>
make[5]: Leaving directory 
'<http://espressomd.org/jenkins/job/master-nightly-distcheck/ws/espresso-3.4-dev-1867-gc2381f0/_build/src/core'>
make[4]: Leaving directory 
'<http://espressomd.org/jenkins/job/master-nightly-distcheck/ws/espresso-3.4-dev-1867-gc2381f0/_build/src/core'>
Making all in tcl
make[4]: Entering directory 
'<http://espressomd.org/jenkins/job/master-nightly-distcheck/ws/espresso-3.4-dev-1867-gc2381f0/_build/src/tcl'>
  CXX      bin_tcl.lo
  CXX      binary_file_tcl.lo
  CXX      blockfile_tcl.lo
  CXX      h5mdfile_tcl.lo
  CXX      rotate_system_tcl.lo
  CXX      readpdb_tcl.lo
  CXX      cells_tcl.lo
  CXX      channels_tcl.lo
  CXX      collision_tcl.lo
  CXX      comfixed_tcl.lo
  CXX      comforce_tcl.lo
  CXX      config_tcl.lo
  CXX      constraint_tcl.lo
  CXX      domain_decomposition_tcl.lo
  CXX      electrokinetics_tcl.lo
  CXX      external_potential_tcl.lo
  CXX      energy_tcl.lo
  CXX      galilei_tcl.lo
  CXX      global_tcl.lo
  CXX      grid_tcl.lo
  CXX      iccp3m_tcl.lo
  CXX      imd_tcl.lo
  CXX      initialize_interpreter.lo
  CXX      integrate_tcl.lo
  CXX      interaction_data_tcl.lo
  CXX      lb-boundaries_tcl.lo
  CXX      lb_tcl.lo
  CXX      lees_edwards_tcl.lo
  CXX      metadynamics_tcl.lo
  CXX      nemd_tcl.lo
  CXX      mol_cut_tcl.lo
  CXX      parser.lo
  CXX      particle_data_tcl.lo
  CXX      polymer_tcl.lo
  CXX      pressure_tcl.lo
  CXX      random_tcl.lo
  CXX      reaction_tcl.lo
  CXX      rattle_tcl.lo
  CXX      statistics_chain_tcl.lo
  CXX      statistics_cluster_tcl.lo
  CXX      statistics_correlation_tcl.lo
  CXX      statistics_fluid_tcl.lo
  CXX      statistics_observable_tcl.lo
  CXX      statistics_wallstuff_tcl.lo
  CXX      statistics_tcl.lo
  CXX      thermostat_tcl.lo
  CXX      topology_tcl.lo
  CXX      tuning_tcl.lo
  CXX      uwerr_tcl.lo
  CXX      virtual_sites_com_tcl.lo
  CXX      ghmc_tcl.lo
  CXX      twist_stack_tcl.lo
  CXX      hydrogen_bond_tcl.lo
  CXX      minimize_energy_tcl.lo
  CXX      integrate_sd_tcl.lo
  CXX      bmhtf-nacl_tcl.lo
  CXX      buckingham_tcl.lo
  CXX      cos2_tcl.lo
  CXX      dpd_tcl.lo
  CXX      forcecap_tcl.lo
  CXX      gaussian_tcl.lo
  CXX      gb_tcl.lo
  CXX      hat_tcl.lo
  CXX      hertzian_tcl.lo
  CXX      lj_tcl.lo
  CXX      ljangle_tcl.lo
  CXX      ljcos2_tcl.lo
  CXX      ljcos_tcl.lo
  CXX      ljgen_tcl.lo
  CXX      morse_tcl.lo
  CXX      soft_sphere_tcl.lo
  CXX      object-in-fluid/affinity_tcl.lo
  CXX      object-in-fluid/membrane_collision_tcl.lo
  CXX      steppot_tcl.lo
  CXX      tab_tcl.lo
  CXX      tunable_slip_tcl.lo
  CXX      angle_tcl.lo
  CXX      angle_harmonic_tcl.lo
  CXX      angle_cosine_tcl.lo
  CXX      angle_cossquare_tcl.lo
  CXX      angledist_tcl.lo
  CXX      dihedral_tcl.lo
  CXX      endangledist_tcl.lo
  CXX      fene_tcl.lo
  CXX      harmonic_dumbbell_tcl.lo
  CXX      harmonic_tcl.lo
  CXX      quartic_tcl.lo
  CXX      bonded_coulomb_tcl.lo
  CXX      overlap_tcl.lo
  CXX      subt_lj_tcl.lo
  CXX      umbrella_tcl.lo
  CXX      object-in-fluid/oif_global_forces_tcl.lo
  CXX      object-in-fluid/oif_local_forces_tcl.lo
  CXX      object-in-fluid/out_direction_tcl.lo
  CXX      immersed_boundary/ibm_triel_tcl.lo
  CXX      immersed_boundary/ibm_volume_conservation_tcl.lo
  CXX      immersed_boundary/ibm_tribend_tcl.lo
  CXX      debye_hueckel_tcl.lo
  CXX      elc_tcl.lo
  CXX      magnetic_non_p3m_methods_tcl.lo
  CXX      maggs_tcl.lo
  CXX      mmm1d_tcl.lo
  CXX      mmm2d_tcl.lo
  CXX      p3m-dipolar_tcl.lo
  CXX      p3m_tcl.lo
  CXX      reaction_field_tcl.lo
  CXX      mdlc_correction_tcl.lo
  CXX      actor/Mmm1dgpu_tcl.lo
  CXX      actor/Ewaldgpu_tcl.lo
  CXX      actor/DipolarDirectSum_tcl.lo
  CXX      actor/HarmonicWell_tcl.lo
  CXX      actor/HarmonicOrientationWell_tcl.lo
  CXX      cuda_init_tcl.lo
  CXXLD    libEspressoTcl.la
  CXX      libEspressoTcl4Py_la-scriptsdir.lo
  CXXLD    libEspressoTcl4Py.la
  CXX      Espresso_install-scriptsdir.o
  CXX      Espresso_install-main.o
  NVCC     cuda_workaround.o
  CXXLD    Espresso.install
  CXX      Espresso-scriptsdir.o
  CXX      Espresso-main.o
  CXXLD    Espresso
make[4]: Leaving directory 
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Making all in python/espressomd
make[4]: Entering directory 
'<http://espressomd.org/jenkins/job/master-nightly-distcheck/ws/espresso-3.4-dev-1867-gc2381f0/_build/src/python/espressomd'>
  GEN      gen_pxiconfig.cpp
Reading definitions from ../../../../src/features.def...
Done.
Writing gen_pxiconfig.cpp...
Done.
  CXXLD    gen_pxiconfig
  GEN      myconfig.pxi
make  all-am
make[5]: Entering directory 
'<http://espressomd.org/jenkins/job/master-nightly-distcheck/ws/espresso-3.4-dev-1867-gc2381f0/_build/src/python/espressomd'>
  CXX      dummy.o
  CXXLD    dummy
  GEN      python-all
  CYTHON   _init.cpp
  CXX      _init.lo
  CXXLD    _init.la
libtool: link: warning: ignoring multiple `-rpath's for a libtool library
  GEN      libEspresso.so
  GEN      _init.so
  CYTHON   _system.cpp
  CXX      _system.lo
In file included from ../../../../src/core/domain_decomposition.hpp:62:0,
                 from _system.cpp:317:
../../../../src/core/thermostat.hpp: In function 'void 
friction_thermo_langevin(Particle*)':
../../../../src/core/thermostat.hpp:181:52: warning: unused variable 
'langevin_temp_coeff' [-Wunused-variable]
   double langevin_pref1_temp, langevin_pref2_temp, langevin_temp_coeff;
                                                    ^
  CXXLD    _system.la
libtool: link: warning: ignoring multiple `-rpath's for a libtool library
  GEN      _system.so
  CYTHON   actors.cpp
  CXX      actors.lo
  CXXLD    actors.la
libtool: link: warning: ignoring multiple `-rpath's for a libtool library
  GEN      actors.so
  CYTHON   analyze.cpp

Error compiling Cython file:
------------------------------------------------------------
...

    cdef double binwd_axial = c_length / c_bins_axial
    cdef double binwd_radial = c_radius / c_bins_radial
    cdef double binvolume, pos_radial, pos_axial

    cdef vector[string] names = ["density", "v_r", "v_t"]
                               ^
------------------------------------------------------------

<http://espressomd.org/jenkins/job/master-nightly-distcheck/ws/espresso-3.4-dev-1867-gc2381f0/src/python/espressomd/analyze.pyx>:223:32:
 Cannot coerce list to type 'vector[string]'
Makefile:755: recipe for target 'analyze.cpp' failed
make[5]: *** [analyze.cpp] Error 1
make[5]: Leaving directory 
'<http://espressomd.org/jenkins/job/master-nightly-distcheck/ws/espresso-3.4-dev-1867-gc2381f0/_build/src/python/espressomd'>
Makefile:445: recipe for target 'all' failed
make[4]: *** [all] Error 2
make[4]: Leaving directory 
'<http://espressomd.org/jenkins/job/master-nightly-distcheck/ws/espresso-3.4-dev-1867-gc2381f0/_build/src/python/espressomd'>
Makefile:449: recipe for target 'all-recursive' failed
make[3]: *** [all-recursive] Error 1
make[3]: Leaving directory 
'<http://espressomd.org/jenkins/job/master-nightly-distcheck/ws/espresso-3.4-dev-1867-gc2381f0/_build/src'>
Makefile:387: recipe for target 'all' failed
make[2]: *** [all] Error 2
make[2]: Leaving directory 
'<http://espressomd.org/jenkins/job/master-nightly-distcheck/ws/espresso-3.4-dev-1867-gc2381f0/_build/src'>
Makefile:475: recipe for target 'all-recursive' failed
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory 
'<http://espressomd.org/jenkins/job/master-nightly-distcheck/ws/espresso-3.4-dev-1867-gc2381f0/_build'>
Makefile:678: recipe for target 'distcheck' failed
make: *** [distcheck] Error 1
+ exit 1
Build step 'Execute shell' marked build as failure
[WARNINGS] Skipping publisher since build result is FAILURE
Archiving artifacts



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