[Espressomd-maintainer] Build failed in Jenkins: master-multiconfig-compile » molcut #43

[Jenkins Demon]

See 
<http://espressomd.org/jenkins/job/master-multiconfig-compile/myconfig=molcut/43/changes>

Changes:

[Florian Weik] random: Reimplementet state gathering.

[Florian Weik] random: Reimplementet state gathering.

[Florian Weik] random:...

[Florian Weik] random: State can now be checkpointed again.

[Florian Weik] maintainer: NEWS

[Florian Weik] travis: Added boost mpi.

[Florian Weik] random: Fix const issue.

[Florian Weik] testsuite: Made langevin_per_particle test deterministic. This 
time for

------------------------------------------
[...truncated 516 lines...]
  CXX      angle_cossquare.lo
  CXX      angledist.lo
  CXX      dihedral.lo
  CXX      endangledist.lo
  CXX      fene.lo
  CXX      harmonic_dumbbell.lo
  CXX      harmonic.lo
  CXX      quartic.lo
  CXX      overlap.lo
  CXX      umbrella.lo
  CXX      bonded_coulomb.lo
  CXX      subt_lj.lo
  CXX      object-in-fluid/oif_global_forces.lo
  CXX      object-in-fluid/oif_local_forces.lo
  CXX      object-in-fluid/out_direction.lo
  CXX      hydrogen_bond.lo
  CXX      twist_stack.lo
  CXX      debye_hueckel.lo
  CXX      elc.lo
  CXX      magnetic_non_p3m_methods.lo
  CXX      mdlc_correction.lo
  CXX      maggs.lo
  CXX      mmm1d.lo
  CXX      mmm2d.lo
  CXX      mmm-common.lo
  CXX      p3m.lo
  CXX      p3m-common.lo
  CXX      p3m-dipolar.lo
  CXX      reaction_field.lo
  GEN      config-version.cpp
  NVCC     cuda_init_cuda.lo
  NVCC     cuda_common_cuda.lo
  NVCC     electrokinetics_cuda.lo
  NVCC     fd-electrostatics_cuda.lo
  NVCC     lbgpu_cuda.lo
  NVCC     p3m_gpu_cuda.lo
  NVCC     EspressoSystemInterface_cuda.lo
  NVCC     integrate_sd_cuda.lo
  NVCC     integrate_sd_cuda_kernel.lo
  NVCC     integrate_sd_cuda_debug.lo
  NVCC     integrate_sd_matrix.lo
  NVCC     integrate_sd_cuda_device.lo
  NVCC     actor/Mmm1dgpuForce_cuda.lo
  NVCC     actor/EwaldGPU_cuda.lo
  NVCC     actor/HarmonicWell_cuda.lo
  NVCC     immersed_boundary/ibm_cuda.lo
  NVCC     actor/DipolarDirectSum_cuda.lo
  NVCC     actor/HarmonicOrientationWell_cuda.lo
  NVCC     p3m_gpu_error_cuda.lo
  CXX      utils/statistics/RunningAverage.lo
  CXX      object-in-fluid/affinity.lo
  CXX      object-in-fluid/membrane_collision.lo
  CXX      immersed_boundary/ibm_main.lo
  CXX      immersed_boundary/ibm_triel.lo
  CXX      immersed_boundary/ibm_volume_conservation.lo
  CXX      immersed_boundary/ibm_tribend.lo
  CXX      immersed_boundary/ibm_cuda_interface.lo
  CXX      actor/ActorList.lo
  CXX      actor/HarmonicWell.lo
  CXX      actor/HarmonicOrientationWell.lo
  CXX      actor/Mmm1dgpuForce.lo
  CXX      actor/EwaldGPU.lo
  CXX      actor/DipolarDirectSum.lo
  CXX      config-version.lo
  CXXLD    libEspresso.la
make[5]: Leaving directory 
'<http://espressomd.org/jenkins/job/master-multiconfig-compile/myconfig=molcut/ws/src/core'>
make[4]: Leaving directory 
'<http://espressomd.org/jenkins/job/master-multiconfig-compile/myconfig=molcut/ws/src/core'>
make[3]: Leaving directory 
'<http://espressomd.org/jenkins/job/master-multiconfig-compile/myconfig=molcut/ws/src/core'>
Making all in tcl
make[3]: Entering directory 
'<http://espressomd.org/jenkins/job/master-multiconfig-compile/myconfig=molcut/ws/src/tcl'>
  CXX      bin_tcl.lo
  CXX      blockfile_tcl.lo
  CXX      h5mdfile_tcl.lo
  CXX      binary_file_tcl.lo
  CXX      rotate_system_tcl.lo
  CXX      readpdb_tcl.lo
  CXX      cells_tcl.lo
  CXX      channels_tcl.lo
  CXX      collision_tcl.lo
  CXX      comfixed_tcl.lo
  CXX      comforce_tcl.lo
  CXX      config_tcl.lo
  CXX      constraint_tcl.lo
  CXX      domain_decomposition_tcl.lo
  CXX      electrokinetics_tcl.lo
  CXX      external_potential_tcl.lo
  CXX      energy_tcl.lo
  CXX      galilei_tcl.lo
  CXX      global_tcl.lo
  CXX      grid_tcl.lo
  CXX      iccp3m_tcl.lo
  CXX      imd_tcl.lo
  CXX      initialize_interpreter.lo
  CXX      integrate_tcl.lo
  CXX      interaction_data_tcl.lo
  CXX      lb-boundaries_tcl.lo
  CXX      lb_tcl.lo
  CXX      lees_edwards_tcl.lo
  CXX      metadynamics_tcl.lo
  CXX      nemd_tcl.lo
  CXX      mol_cut_tcl.lo
  CXX      parser.lo
  CXX      particle_data_tcl.lo
  CXX      polymer_tcl.lo
  CXX      pressure_tcl.lo
  CXX      random_tcl.lo
  CXX      reaction_tcl.lo
  CXX      rattle_tcl.lo
  CXX      statistics_chain_tcl.lo
  CXX      statistics_cluster_tcl.lo
  CXX      statistics_correlation_tcl.lo
  CXX      statistics_fluid_tcl.lo
  CXX      statistics_observable_tcl.lo
  CXX      statistics_wallstuff_tcl.lo
  CXX      statistics_tcl.lo
  CXX      thermostat_tcl.lo
  CXX      topology_tcl.lo
  CXX      tuning_tcl.lo
  CXX      uwerr_tcl.lo
  CXX      virtual_sites_com_tcl.lo
  CXX      ghmc_tcl.lo
  CXX      twist_stack_tcl.lo
  CXX      hydrogen_bond_tcl.lo
  CXX      minimize_energy_tcl.lo
  CXX      integrate_sd_tcl.lo
  CXX      mpiio_tcl.lo
  CXX      bmhtf-nacl_tcl.lo
  CXX      buckingham_tcl.lo
  CXX      cos2_tcl.lo
  CXX      dpd_tcl.lo
  CXX      forcecap_tcl.lo
  CXX      gaussian_tcl.lo
  CXX      gb_tcl.lo
  CXX      hat_tcl.lo
  CXX      hertzian_tcl.lo
  CXX      lj_tcl.lo
  CXX      ljangle_tcl.lo
  CXX      ljcos2_tcl.lo
  CXX      ljcos_tcl.lo
  CXX      ljgen_tcl.lo
  CXX      morse_tcl.lo
  CXX      soft_sphere_tcl.lo
  CXX      steppot_tcl.lo
  CXX      tab_tcl.lo
  CXX      tunable_slip_tcl.lo
  CXX      angle_tcl.lo
  CXX      angle_harmonic_tcl.lo
  CXX      angle_cosine_tcl.lo
  CXX      angle_cossquare_tcl.lo
  CXX      angledist_tcl.lo
  CXX      dihedral_tcl.lo
  CXX      endangledist_tcl.lo
  CXX      fene_tcl.lo
  CXX      harmonic_dumbbell_tcl.lo
  CXX      harmonic_tcl.lo
  CXX      quartic_tcl.lo
  CXX      bonded_coulomb_tcl.lo
  CXX      overlap_tcl.lo
  CXX      subt_lj_tcl.lo
  CXX      umbrella_tcl.lo
  CXX      object-in-fluid/oif_global_forces_tcl.lo
  CXX      object-in-fluid/oif_local_forces_tcl.lo
  CXX      object-in-fluid/out_direction_tcl.lo
  CXX      debye_hueckel_tcl.lo
  CXX      elc_tcl.lo
  CXX      magnetic_non_p3m_methods_tcl.lo
  CXX      maggs_tcl.lo
  CXX      mmm1d_tcl.lo
  CXX      mmm2d_tcl.lo
  CXX      p3m-dipolar_tcl.lo
  CXX      p3m_tcl.lo
  CXX      reaction_field_tcl.lo
  CXX      mdlc_correction_tcl.lo
  CXX      cuda_init_tcl.lo
  CXX      Espresso_install-scriptsdir.o
  CXX      Espresso_install-main.o
  NVCC     cuda_workaround.o
  CXX      Espresso-scriptsdir.o
  CXX      Espresso-main.o
  CXX      object-in-fluid/affinity_tcl.lo
  CXX      object-in-fluid/membrane_collision_tcl.lo
  CXX      immersed_boundary/ibm_triel_tcl.lo
  CXX      immersed_boundary/ibm_volume_conservation_tcl.lo
  CXX      immersed_boundary/ibm_tribend_tcl.lo
  CXX      actor/Mmm1dgpu_tcl.lo
  CXX      actor/Ewaldgpu_tcl.lo
  CXX      actor/DipolarDirectSum_tcl.lo
  CXX      actor/HarmonicWell_tcl.lo
  CXX      actor/HarmonicOrientationWell_tcl.lo
  CXXLD    libEspressoTcl.la
  CXXLD    Espresso.install
  CXXLD    Espresso
../core/..libs/./libEspresso.socore:/ .libsundefined/ libEspresso.soreference:  
toundefined  `reference boostto: 
`:boostmpi:::mpi:::communicatorcommunicator::::communicatorcommunicator((ompi_communicator_tompi_communicator_t**
 const &const, &boost,: :mpiboost::::comm_create_kindmpi)':
:..comm_create_kind/)core'/
.libs./.libEspresso.so/: coreundefined/ reference. libsto 
/`boostlibEspresso.so:::archive ::undefineddetail: :referencebasic_iarchive: 
:tobasic_iarchive (`unsigned boostint):':
.archive.:/core:/detail.libs:/:libEspresso.so:basic_iarchive :undefined 
:referencebasic_iarchive (to unsigned`boost :int:)mpi:':
communicator:.:.operator/ coreompi_communicator_t/*(.)libs /const'libEspresso.so
:. ./undefinedcore /.referencelibs/ libEspresso.soto:  `undefinedboost 
reference: :tompi `:boost::communicator::archive:::operatordetail 
::ompi_communicator_tshared_ptr_helper*::(shared_ptr_helper)( )'const
'.
../core.//.libscore//libEspresso.so:. libsundefined/ referencelibEspresso.so 
:to  `undefinedboost ::referencearchive :to:detail 
:`:shared_ptr_helperboost:::~:shared_ptr_helperarchive(:)':
.detail./:core:/.shared_ptr_helperlibs:/:libEspresso.so:shared_ptr_helper 
(undefined )reference' 
to. `.boost:/:mpicore::/exception.::libsexception/(charlibEspresso.so :const 
*,undefined  int)reference'
 .to. /core`/boost.libs:/:libEspresso.so:archive :undefined: detailreference: 
:to shared_ptr_helper`:vtable :for~ boostshared_ptr_helper:(:)mpi:':
exception'.
...//corecore//..libslibs//libEspresso.so:libEspresso.so :undefined  
referenceundefined to  `referencetypeinfo  tofor  
boost`::boostarchive::::detail:mpi::basic_iarchive:'
exception.:./:core/exception.(libs/charlibEspresso.so : constundefined* 
reference, to  `intboost)::'mpi
::.communicator.:/:corecommunicator(/).'libs
/../libEspresso.socore:/ .libsundefined/ libEspresso.so:reference undefined  
toreference  to ``boostvtable: :formpi 
:boost:exception::::~mpiexception:():'exception
'.
./.core.//.libscore//libEspresso.so.: libsundefined/ referencelibEspresso.so 
to:  `undefinedboost ::referencempi ::toexception ::`~exceptiontypeinfo( )for'
 .boost.:/core:/.archivelibs:/:libEspresso.sodetail: :undefined: 
referencebasic_iarchive to' 
`.boost.:/:archivecore::/detail.:libs:/basic_oarchive:libEspresso.so::basic_oarchive
 (unsignedundefined  int)reference' 
to.. /`core/boost.libs:/:libEspresso.so:mpi :undefined :reference 
communicatorto: :`boostcommunicator:(:)archive:':
detail:.:.basic_oarchive/::coreend_preamble/().'libs
/..libEspresso.so/:core/ .undefinedlibs /libEspresso.soreference:  toundefined  
reference` boostto :`:void 
mpiboost::::mpiexception::::communicator~::exceptionsend(<)boost':
:mpi.:.:/packed_oarchivecore>/(int.,libs int/, libEspresso.soboost:: 
:mpiundefined: :referencepacked_oarchive  constto& ) `constboost':
:..mpi/:core/:.exceptionlibs/:libEspresso.so::~ undefinedexception (reference 
)to' `
boost.::.mpi/:core:/status .boostlibs:/:mpilibEspresso.so:::communicator 
:undefined: recv<referenceboost: :mpito: :`packed_iarchive>boost(:int:, 
archiveint:, :boost:detail:mpi::::basic_oarchivepacked_iarchive&:): 
basic_oarchiveconst'(
unsigned.. /coreint/).libs'/
libEspresso.so:. .undefined /referencecore /to .`libstypeinfo /for 
libEspresso.soboost::: mpi:undefined: exception'reference
 .to./ core`/.boostlibs:/:libEspresso.so:archive :undefined: referencedetail 
:to :`boostbasic_oarchive:::archive:::end_preambledetail:(:)basic_iarchive':
:~.basic_iarchive.()/'core
././.corelibs/./libs/libEspresso.solibEspresso.so::  undefinedundefined  
reference referenceto  `totypeinfo  `for voidboost 
::boostarchive::::detailmpi::::basic_oarchive'communicator
:..:/sendcore</boost.libs:/:libEspresso.sompi:: :undefined 
packed_oarchivereference >to( int`,boost: :intarchive:,: 
detail:boost::basic_oarchive:::mpi~:basic_oarchive:()packed_oarchive' 
const&) const'
../core/.libs/libEspresso.so: undefined reference to `boost::mpi::status 
boost::mpi::communicator::recv<boost::mpi::packed_iarchive>(int, int, 
boost::mpi::packed_iarchive&) const'
../core/.libs/libEspresso.so:collect2: error: ld returned 1 exit status
 undefined reference to `typeinfo for boost::mpi::exception'
../core/.libs/libEspresso.so: undefined reference to 
`boost::archive::detail::basic_iarchive::~basic_iarchive()'
../core/.libs/libEspresso.so: undefined reference to `typeinfo for 
boost::archive::detail::basic_oarchive'
../core/.libs/libEspresso.so: undefined reference to 
`boost::archive::detail::basic_oarchive::~basic_oarchive()'
collect2: error: ld returned 1 exit status
Makefile:884: recipe for target 'Espresso' failed
make[3]: *** [Espresso] Error 1
make[3]: *** Waiting for unfinished jobs....
Makefile:888: recipe for target 'Espresso.install' failed
make[3]: *** [Espresso.install] Error 1
make[3]: Leaving directory 
'<http://espressomd.org/jenkins/job/master-multiconfig-compile/myconfig=molcut/ws/src/tcl'>
Makefile:449: recipe for target 'all-recursive' failed
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory 
'<http://espressomd.org/jenkins/job/master-multiconfig-compile/myconfig=molcut/ws/src'>
Makefile:387: recipe for target 'all' failed
make[1]: *** [all] Error 2
make[1]: Leaving directory 
'<http://espressomd.org/jenkins/job/master-multiconfig-compile/myconfig=molcut/ws/src'>
Makefile:475: recipe for target 'all-recursive' failed
make: *** [all-recursive] Error 1
+ exit 1
Build step 'Execute shell' marked build as failure
[WARNINGS] Skipping publisher since build result is FAILURE