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[Espressomd-maintainer] Build failed in Jenkins: master-multiconfig-comp
From: |
Jenkins Demon |
Subject: |
[Espressomd-maintainer] Build failed in Jenkins: master-multiconfig-compile » lees-edwards #43 |
Date: |
Mon, 2 May 2016 16:24:47 +0200 (CEST) |
See
<http://espressomd.org/jenkins/job/master-multiconfig-compile/myconfig=lees-edwards/43/changes>
Changes:
[Florian Weik] random: Reimplementet state gathering.
[Florian Weik] random: Reimplementet state gathering.
[Florian Weik] random:...
[Florian Weik] random: State can now be checkpointed again.
[Florian Weik] maintainer: NEWS
[Florian Weik] travis: Added boost mpi.
[Florian Weik] random: Fix const issue.
[Florian Weik] testsuite: Made langevin_per_particle test deterministic. This
time for
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[...truncated 516 lines...]
CXX angle_cossquare.lo
CXX angledist.lo
CXX dihedral.lo
CXX endangledist.lo
CXX fene.lo
CXX harmonic_dumbbell.lo
CXX harmonic.lo
CXX quartic.lo
CXX overlap.lo
CXX umbrella.lo
CXX bonded_coulomb.lo
CXX subt_lj.lo
CXX object-in-fluid/oif_global_forces.lo
CXX object-in-fluid/oif_local_forces.lo
CXX object-in-fluid/out_direction.lo
CXX hydrogen_bond.lo
CXX twist_stack.lo
CXX debye_hueckel.lo
CXX elc.lo
CXX magnetic_non_p3m_methods.lo
CXX mdlc_correction.lo
CXX maggs.lo
CXX mmm1d.lo
CXX mmm2d.lo
CXX mmm-common.lo
CXX p3m.lo
CXX p3m-common.lo
CXX p3m-dipolar.lo
CXX reaction_field.lo
GEN config-version.cpp
NVCC cuda_init_cuda.lo
NVCC cuda_common_cuda.lo
NVCC electrokinetics_cuda.lo
NVCC fd-electrostatics_cuda.lo
NVCC lbgpu_cuda.lo
NVCC p3m_gpu_cuda.lo
NVCC EspressoSystemInterface_cuda.lo
NVCC integrate_sd_cuda.lo
NVCC integrate_sd_cuda_kernel.lo
NVCC integrate_sd_cuda_debug.lo
NVCC integrate_sd_matrix.lo
NVCC integrate_sd_cuda_device.lo
NVCC actor/Mmm1dgpuForce_cuda.lo
NVCC actor/EwaldGPU_cuda.lo
NVCC actor/HarmonicWell_cuda.lo
NVCC immersed_boundary/ibm_cuda.lo
NVCC actor/DipolarDirectSum_cuda.lo
NVCC actor/HarmonicOrientationWell_cuda.lo
NVCC p3m_gpu_error_cuda.lo
CXX utils/statistics/RunningAverage.lo
CXX object-in-fluid/affinity.lo
CXX object-in-fluid/membrane_collision.lo
CXX immersed_boundary/ibm_main.lo
CXX immersed_boundary/ibm_triel.lo
CXX immersed_boundary/ibm_volume_conservation.lo
CXX immersed_boundary/ibm_tribend.lo
CXX immersed_boundary/ibm_cuda_interface.lo
CXX actor/ActorList.lo
CXX actor/HarmonicWell.lo
CXX actor/HarmonicOrientationWell.lo
CXX actor/Mmm1dgpuForce.lo
CXX actor/EwaldGPU.lo
CXX actor/DipolarDirectSum.lo
CXX config-version.lo
CXXLD libEspresso.la
make[5]: Leaving directory
'<http://espressomd.org/jenkins/job/master-multiconfig-compile/myconfig=lees-edwards/ws/src/core'>
make[4]: Leaving directory
'<http://espressomd.org/jenkins/job/master-multiconfig-compile/myconfig=lees-edwards/ws/src/core'>
make[3]: Leaving directory
'<http://espressomd.org/jenkins/job/master-multiconfig-compile/myconfig=lees-edwards/ws/src/core'>
Making all in tcl
make[3]: Entering directory
'<http://espressomd.org/jenkins/job/master-multiconfig-compile/myconfig=lees-edwards/ws/src/tcl'>
CXX bin_tcl.lo
CXX binary_file_tcl.lo
CXX blockfile_tcl.lo
CXX h5mdfile_tcl.lo
CXX rotate_system_tcl.lo
CXX readpdb_tcl.lo
CXX cells_tcl.lo
CXX channels_tcl.lo
CXX collision_tcl.lo
CXX comfixed_tcl.lo
CXX comforce_tcl.lo
CXX config_tcl.lo
CXX constraint_tcl.lo
CXX domain_decomposition_tcl.lo
CXX electrokinetics_tcl.lo
CXX external_potential_tcl.lo
CXX energy_tcl.lo
CXX galilei_tcl.lo
CXX global_tcl.lo
CXX grid_tcl.lo
CXX iccp3m_tcl.lo
CXX imd_tcl.lo
CXX initialize_interpreter.lo
CXX integrate_tcl.lo
CXX interaction_data_tcl.lo
CXX lb-boundaries_tcl.lo
CXX lb_tcl.lo
CXX lees_edwards_tcl.lo
CXX metadynamics_tcl.lo
CXX nemd_tcl.lo
CXX mol_cut_tcl.lo
CXX parser.lo
CXX particle_data_tcl.lo
CXX polymer_tcl.lo
CXX pressure_tcl.lo
CXX random_tcl.lo
CXX reaction_tcl.lo
CXX rattle_tcl.lo
CXX statistics_chain_tcl.lo
CXX statistics_cluster_tcl.lo
CXX statistics_correlation_tcl.lo
CXX statistics_fluid_tcl.lo
CXX statistics_observable_tcl.lo
CXX statistics_wallstuff_tcl.lo
CXX statistics_tcl.lo
CXX thermostat_tcl.lo
CXX topology_tcl.lo
CXX tuning_tcl.lo
CXX uwerr_tcl.lo
CXX virtual_sites_com_tcl.lo
CXX ghmc_tcl.lo
CXX twist_stack_tcl.lo
CXX hydrogen_bond_tcl.lo
CXX minimize_energy_tcl.lo
CXX integrate_sd_tcl.lo
CXX mpiio_tcl.lo
CXX bmhtf-nacl_tcl.lo
CXX buckingham_tcl.lo
CXX cos2_tcl.lo
CXX dpd_tcl.lo
CXX forcecap_tcl.lo
CXX gaussian_tcl.lo
CXX gb_tcl.lo
CXX hat_tcl.lo
CXX hertzian_tcl.lo
CXX lj_tcl.lo
CXX ljangle_tcl.lo
CXX ljcos2_tcl.lo
CXX ljcos_tcl.lo
CXX ljgen_tcl.lo
CXX morse_tcl.lo
CXX soft_sphere_tcl.lo
CXX steppot_tcl.lo
CXX tab_tcl.lo
CXX tunable_slip_tcl.lo
CXX angle_tcl.lo
CXX angle_harmonic_tcl.lo
CXX angle_cosine_tcl.lo
CXX angle_cossquare_tcl.lo
CXX angledist_tcl.lo
CXX dihedral_tcl.lo
CXX endangledist_tcl.lo
CXX fene_tcl.lo
CXX harmonic_dumbbell_tcl.lo
CXX harmonic_tcl.lo
CXX bonded_coulomb_tcl.lo
CXX quartic_tcl.lo
CXX overlap_tcl.lo
CXX subt_lj_tcl.lo
CXX umbrella_tcl.lo
CXX object-in-fluid/oif_global_forces_tcl.lo
CXX object-in-fluid/oif_local_forces_tcl.lo
CXX object-in-fluid/out_direction_tcl.lo
CXX debye_hueckel_tcl.lo
CXX elc_tcl.lo
CXX magnetic_non_p3m_methods_tcl.lo
CXX maggs_tcl.lo
CXX mmm1d_tcl.lo
CXX mmm2d_tcl.lo
CXX p3m-dipolar_tcl.lo
CXX p3m_tcl.lo
CXX reaction_field_tcl.lo
CXX mdlc_correction_tcl.lo
CXX cuda_init_tcl.lo
CXX Espresso_install-scriptsdir.o
CXX Espresso_install-main.o
NVCC cuda_workaround.o
CXX Espresso-scriptsdir.o
CXX Espresso-main.o
CXX object-in-fluid/affinity_tcl.lo
CXX object-in-fluid/membrane_collision_tcl.lo
CXX immersed_boundary/ibm_triel_tcl.lo
CXX immersed_boundary/ibm_volume_conservation_tcl.lo
CXX immersed_boundary/ibm_tribend_tcl.lo
CXX actor/Mmm1dgpu_tcl.lo
CXX actor/Ewaldgpu_tcl.lo
CXX actor/DipolarDirectSum_tcl.lo
CXX actor/HarmonicWell_tcl.lo
CXX actor/HarmonicOrientationWell_tcl.lo
CXXLD libEspressoTcl.la
CXXLD Espresso.install
CXXLD Espresso
../core/.libs/libEspresso.so: undefined reference to
`.boost::mpi.:/:corecommunicator/:.:libs/communicatorlibEspresso.so(:
ompi_communicator_tundefined* referenceconst &to, `
boostboost::::mpi:mpi::communicator:::comm_create_kindcommunicator)('ompi_communicator_t
*. const.&/,core /boost:.:libsmpi:/:libEspresso.socomm_create_kind:)'
undefined. ./referencecore /.tolibs /`libEspresso.so:boost :undefined:
referencearchive :to:
`detailboost::::archive:basic_iarchive::detail:::basic_iarchivebasic_iarchive(:unsigned:basic_iarchive
(intunsigned) 'int)
'.
...//corecore//..libs/libslibEspresso.so/: libEspresso.soundefined: reference
undefinedto reference`boost :to:mpi ::`communicatorboost::::operator
mpiompi_communicator_t:*(:)communicator const:'
:..operator/ core/ompi_communicator_t.*libs(/)libEspresso.so :const undefined'
reference. .to/ `coreboost/::.archivelibs:/:detaillibEspresso.so:::
shared_ptr_helper:undefined: shared_ptr_helperreference() 'to
..`/boostcore:/:.libsarchive/:libEspresso.so:: detailundefined :reference:
shared_ptr_helperto :`:boost::shared_ptr_helperarchive(::)detail'::
shared_ptr_helper.:.:/~coreshared_ptr_helper/().'libs
/../libEspresso.socore:/ .libsundefined/ libEspresso.so:reference undefined
toreference `to
boost`:boost:::archivempi::::exceptiondetail:::exception:(charshared_ptr_helper
const:*:,~ intshared_ptr_helper)'(
)..'/
core/...libs//libEspresso.socore: /undefined. libsreference/ tolibEspresso.so
:` vtable undefinedfor referenceboost ::tompi: :`exceptionboost':
:.mpi./:core:/.exceptionlibs/:libEspresso.so::exception (undefined
charreference toconst *`,typeinfo for intboost):':
archive.::.detail/::corebasic_iarchive/'
..libs.//corelibEspresso.so/:. libs/undefinedlibEspresso.so :
referenceundefined toreference to` `vtableboost :for:
mpi:boost::communicator:::mpicommunicator:(:)'exception
'..
/core./../libs/corelibEspresso.so:/ .undefinedlibs /reference libEspresso.soto:
` boost:undefined: mpi:reference: exceptionto:: ~`exception(typeinfo)'
.for. /coreboost/:.:libs/archivelibEspresso.so::: undefineddetail :reference
:to basic_iarchive`'boost
::.mpi.::/exceptioncore::/~.exceptionlibs(/)'
libEspresso.so.:./ coreundefined/ .libsreference/ libEspresso.so:to undefined
`referenceboost :to:
`mpiboost::::archivecommunicator::::detail:communicator:(basic_oarchive:):basic_oarchive'(
unsigned .int.)/'
core..//.corelibs//.libslibEspresso.so/:libEspresso.so : undefinedundefined
referencereference toto
``boost:boost::archive:::mpidetail::::exceptionbasic_oarchive::::~end_preamble(exception)('
).'./
core./../libscore//libEspresso.so:. libsundefined/ referencelibEspresso.so :to
`undefinedvoid referenceboost: :tompi:
:`communicator:boost::send<:boost:mpi::mpi:::exceptionpacked_oarchive:>(:int~,
exceptionint(, )boost':
:mpi:.:.packed_oarchive /constcore&/) .constlibs'/
.libEspresso.so.:/ core/undefined. libsreference/ libEspresso.so:to undefined`
referenceboost :to :`archiveboost::::mpidetail::::status
basic_oarchiveboost::::mpibasic_oarchive:(:unsignedcommunicator
::intrecv)<'boost:
:.mpi.::/packed_iarchive>core(/int.,libs /int,libEspresso.so :boost:
:undefinedmpi ::referencepacked_iarchive &)to const'`
boost.:./:corearchive/:.libs:/detail:libEspresso.so:: basic_oarchiveundefined
:reference: toend_preamble (`)typeinfo'
for .boost.:/:corempi/::.exceptionlibs'/
.libEspresso.so./:core /undefined. libs/referencelibEspresso.so: toundefined
reference` tovoid
`boostboost::::archive:mpi::detail:::communicatorbasic_iarchive:::~:basic_iarchivesend(<)'boost
:.:./mpicore:/.:libs/packed_oarchivelibEspresso.so:> (undefinedint ,reference
toint ,` typeinfo boostfor: :boost:mpi::archive::packed_oarchive:detail
:const:&basic_oarchive')
..const/'core/
..libs/.libEspresso.so/:core /undefined. libsreference/ tolibEspresso.so
:`boost ::undefinedarchive ::referencedetail ::tobasic_oarchive
:`:~boostbasic_oarchive:():'mpi
::status boost::mpi::communicator::recv<boost::mpi::packed_iarchive>(int, int,
boost::mpi::packed_iarchive&) const'
../core/.libs/libEspresso.so: undefined reference to `typeinfo for
boost::mpi::exception'collect2: error: ld returned 1 exit status
../core/.libs/libEspresso.so: undefined reference to
`boost::archive::detail::basic_iarchive::~basic_iarchive()'
../core/.libs/libEspresso.so: undefined reference to `typeinfo for
boost::archive::detail::basic_oarchive'
../core/.libs/libEspresso.so: undefined reference to
`boost::archive::detail::basic_oarchive::~basic_oarchive()'
collect2: error: ld returned 1 exit status
Makefile:884: recipe for target 'Espresso' failed
make[3]: *** [Espresso] Error 1
make[3]: *** Waiting for unfinished jobs....
Makefile:888: recipe for target 'Espresso.install' failed
make[3]: *** [Espresso.install] Error 1
make[3]: Leaving directory
'<http://espressomd.org/jenkins/job/master-multiconfig-compile/myconfig=lees-edwards/ws/src/tcl'>
Makefile:449: recipe for target 'all-recursive' failed
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory
'<http://espressomd.org/jenkins/job/master-multiconfig-compile/myconfig=lees-edwards/ws/src'>
Makefile:387: recipe for target 'all' failed
make[1]: *** [all] Error 2
make[1]: Leaving directory
'<http://espressomd.org/jenkins/job/master-multiconfig-compile/myconfig=lees-edwards/ws/src'>
Makefile:475: recipe for target 'all-recursive' failed
make: *** [all-recursive] Error 1
+ exit 1
Build step 'Execute shell' marked build as failure
[WARNINGS] Skipping publisher since build result is FAILURE
- [Espressomd-maintainer] Build failed in Jenkins: master-multiconfig-compile » lees-edwards #43,
Jenkins Demon <=