espressomd-maintainer
[Top][All Lists]
Advanced

[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]

[Espressomd-maintainer] Build failed in Jenkins: master-multiconfig-comp


From: Jenkins Demon
Subject: [Espressomd-maintainer] Build failed in Jenkins: master-multiconfig-compile » lees-edwards #43
Date: Mon, 2 May 2016 16:24:47 +0200 (CEST)

See 
<http://espressomd.org/jenkins/job/master-multiconfig-compile/myconfig=lees-edwards/43/changes>

Changes:

[Florian Weik] random: Reimplementet state gathering.

[Florian Weik] random: Reimplementet state gathering.

[Florian Weik] random:...

[Florian Weik] random: State can now be checkpointed again.

[Florian Weik] maintainer: NEWS

[Florian Weik] travis: Added boost mpi.

[Florian Weik] random: Fix const issue.

[Florian Weik] testsuite: Made langevin_per_particle test deterministic. This 
time for

------------------------------------------
[...truncated 516 lines...]
  CXX      angle_cossquare.lo
  CXX      angledist.lo
  CXX      dihedral.lo
  CXX      endangledist.lo
  CXX      fene.lo
  CXX      harmonic_dumbbell.lo
  CXX      harmonic.lo
  CXX      quartic.lo
  CXX      overlap.lo
  CXX      umbrella.lo
  CXX      bonded_coulomb.lo
  CXX      subt_lj.lo
  CXX      object-in-fluid/oif_global_forces.lo
  CXX      object-in-fluid/oif_local_forces.lo
  CXX      object-in-fluid/out_direction.lo
  CXX      hydrogen_bond.lo
  CXX      twist_stack.lo
  CXX      debye_hueckel.lo
  CXX      elc.lo
  CXX      magnetic_non_p3m_methods.lo
  CXX      mdlc_correction.lo
  CXX      maggs.lo
  CXX      mmm1d.lo
  CXX      mmm2d.lo
  CXX      mmm-common.lo
  CXX      p3m.lo
  CXX      p3m-common.lo
  CXX      p3m-dipolar.lo
  CXX      reaction_field.lo
  GEN      config-version.cpp
  NVCC     cuda_init_cuda.lo
  NVCC     cuda_common_cuda.lo
  NVCC     electrokinetics_cuda.lo
  NVCC     fd-electrostatics_cuda.lo
  NVCC     lbgpu_cuda.lo
  NVCC     p3m_gpu_cuda.lo
  NVCC     EspressoSystemInterface_cuda.lo
  NVCC     integrate_sd_cuda.lo
  NVCC     integrate_sd_cuda_kernel.lo
  NVCC     integrate_sd_cuda_debug.lo
  NVCC     integrate_sd_matrix.lo
  NVCC     integrate_sd_cuda_device.lo
  NVCC     actor/Mmm1dgpuForce_cuda.lo
  NVCC     actor/EwaldGPU_cuda.lo
  NVCC     actor/HarmonicWell_cuda.lo
  NVCC     immersed_boundary/ibm_cuda.lo
  NVCC     actor/DipolarDirectSum_cuda.lo
  NVCC     actor/HarmonicOrientationWell_cuda.lo
  NVCC     p3m_gpu_error_cuda.lo
  CXX      utils/statistics/RunningAverage.lo
  CXX      object-in-fluid/affinity.lo
  CXX      object-in-fluid/membrane_collision.lo
  CXX      immersed_boundary/ibm_main.lo
  CXX      immersed_boundary/ibm_triel.lo
  CXX      immersed_boundary/ibm_volume_conservation.lo
  CXX      immersed_boundary/ibm_tribend.lo
  CXX      immersed_boundary/ibm_cuda_interface.lo
  CXX      actor/ActorList.lo
  CXX      actor/HarmonicWell.lo
  CXX      actor/HarmonicOrientationWell.lo
  CXX      actor/Mmm1dgpuForce.lo
  CXX      actor/EwaldGPU.lo
  CXX      actor/DipolarDirectSum.lo
  CXX      config-version.lo
  CXXLD    libEspresso.la
make[5]: Leaving directory 
'<http://espressomd.org/jenkins/job/master-multiconfig-compile/myconfig=lees-edwards/ws/src/core'>
make[4]: Leaving directory 
'<http://espressomd.org/jenkins/job/master-multiconfig-compile/myconfig=lees-edwards/ws/src/core'>
make[3]: Leaving directory 
'<http://espressomd.org/jenkins/job/master-multiconfig-compile/myconfig=lees-edwards/ws/src/core'>
Making all in tcl
make[3]: Entering directory 
'<http://espressomd.org/jenkins/job/master-multiconfig-compile/myconfig=lees-edwards/ws/src/tcl'>
  CXX      bin_tcl.lo
  CXX      binary_file_tcl.lo
  CXX      blockfile_tcl.lo
  CXX      h5mdfile_tcl.lo
  CXX      rotate_system_tcl.lo
  CXX      readpdb_tcl.lo
  CXX      cells_tcl.lo
  CXX      channels_tcl.lo
  CXX      collision_tcl.lo
  CXX      comfixed_tcl.lo
  CXX      comforce_tcl.lo
  CXX      config_tcl.lo
  CXX      constraint_tcl.lo
  CXX      domain_decomposition_tcl.lo
  CXX      electrokinetics_tcl.lo
  CXX      external_potential_tcl.lo
  CXX      energy_tcl.lo
  CXX      galilei_tcl.lo
  CXX      global_tcl.lo
  CXX      grid_tcl.lo
  CXX      iccp3m_tcl.lo
  CXX      imd_tcl.lo
  CXX      initialize_interpreter.lo
  CXX      integrate_tcl.lo
  CXX      interaction_data_tcl.lo
  CXX      lb-boundaries_tcl.lo
  CXX      lb_tcl.lo
  CXX      lees_edwards_tcl.lo
  CXX      metadynamics_tcl.lo
  CXX      nemd_tcl.lo
  CXX      mol_cut_tcl.lo
  CXX      parser.lo
  CXX      particle_data_tcl.lo
  CXX      polymer_tcl.lo
  CXX      pressure_tcl.lo
  CXX      random_tcl.lo
  CXX      reaction_tcl.lo
  CXX      rattle_tcl.lo
  CXX      statistics_chain_tcl.lo
  CXX      statistics_cluster_tcl.lo
  CXX      statistics_correlation_tcl.lo
  CXX      statistics_fluid_tcl.lo
  CXX      statistics_observable_tcl.lo
  CXX      statistics_wallstuff_tcl.lo
  CXX      statistics_tcl.lo
  CXX      thermostat_tcl.lo
  CXX      topology_tcl.lo
  CXX      tuning_tcl.lo
  CXX      uwerr_tcl.lo
  CXX      virtual_sites_com_tcl.lo
  CXX      ghmc_tcl.lo
  CXX      twist_stack_tcl.lo
  CXX      hydrogen_bond_tcl.lo
  CXX      minimize_energy_tcl.lo
  CXX      integrate_sd_tcl.lo
  CXX      mpiio_tcl.lo
  CXX      bmhtf-nacl_tcl.lo
  CXX      buckingham_tcl.lo
  CXX      cos2_tcl.lo
  CXX      dpd_tcl.lo
  CXX      forcecap_tcl.lo
  CXX      gaussian_tcl.lo
  CXX      gb_tcl.lo
  CXX      hat_tcl.lo
  CXX      hertzian_tcl.lo
  CXX      lj_tcl.lo
  CXX      ljangle_tcl.lo
  CXX      ljcos2_tcl.lo
  CXX      ljcos_tcl.lo
  CXX      ljgen_tcl.lo
  CXX      morse_tcl.lo
  CXX      soft_sphere_tcl.lo
  CXX      steppot_tcl.lo
  CXX      tab_tcl.lo
  CXX      tunable_slip_tcl.lo
  CXX      angle_tcl.lo
  CXX      angle_harmonic_tcl.lo
  CXX      angle_cosine_tcl.lo
  CXX      angle_cossquare_tcl.lo
  CXX      angledist_tcl.lo
  CXX      dihedral_tcl.lo
  CXX      endangledist_tcl.lo
  CXX      fene_tcl.lo
  CXX      harmonic_dumbbell_tcl.lo
  CXX      harmonic_tcl.lo
  CXX      bonded_coulomb_tcl.lo
  CXX      quartic_tcl.lo
  CXX      overlap_tcl.lo
  CXX      subt_lj_tcl.lo
  CXX      umbrella_tcl.lo
  CXX      object-in-fluid/oif_global_forces_tcl.lo
  CXX      object-in-fluid/oif_local_forces_tcl.lo
  CXX      object-in-fluid/out_direction_tcl.lo
  CXX      debye_hueckel_tcl.lo
  CXX      elc_tcl.lo
  CXX      magnetic_non_p3m_methods_tcl.lo
  CXX      maggs_tcl.lo
  CXX      mmm1d_tcl.lo
  CXX      mmm2d_tcl.lo
  CXX      p3m-dipolar_tcl.lo
  CXX      p3m_tcl.lo
  CXX      reaction_field_tcl.lo
  CXX      mdlc_correction_tcl.lo
  CXX      cuda_init_tcl.lo
  CXX      Espresso_install-scriptsdir.o
  CXX      Espresso_install-main.o
  NVCC     cuda_workaround.o
  CXX      Espresso-scriptsdir.o
  CXX      Espresso-main.o
  CXX      object-in-fluid/affinity_tcl.lo
  CXX      object-in-fluid/membrane_collision_tcl.lo
  CXX      immersed_boundary/ibm_triel_tcl.lo
  CXX      immersed_boundary/ibm_volume_conservation_tcl.lo
  CXX      immersed_boundary/ibm_tribend_tcl.lo
  CXX      actor/Mmm1dgpu_tcl.lo
  CXX      actor/Ewaldgpu_tcl.lo
  CXX      actor/DipolarDirectSum_tcl.lo
  CXX      actor/HarmonicWell_tcl.lo
  CXX      actor/HarmonicOrientationWell_tcl.lo
  CXXLD    libEspressoTcl.la
  CXXLD    Espresso.install
  CXXLD    Espresso
../core/.libs/libEspresso.so: undefined reference to 
`.boost::mpi.:/:corecommunicator/:.:libs/communicatorlibEspresso.so(: 
ompi_communicator_tundefined*  referenceconst &to, ` 
boostboost::::mpi:mpi::communicator:::comm_create_kindcommunicator)('ompi_communicator_t
*. const.&/,core /boost:.:libsmpi:/:libEspresso.socomm_create_kind:)' 
undefined. ./referencecore /.tolibs /`libEspresso.so:boost :undefined: 
referencearchive :to: 
`detailboost::::archive:basic_iarchive::detail:::basic_iarchivebasic_iarchive(:unsigned:basic_iarchive
 (intunsigned) 'int)
'.
...//corecore//..libs/libslibEspresso.so/: libEspresso.soundefined:  reference 
undefinedto  reference`boost :to:mpi ::`communicatorboost::::operator 
mpiompi_communicator_t:*(:)communicator const:'
:..operator/ core/ompi_communicator_t.*libs(/)libEspresso.so :const undefined' 
reference. .to/ `coreboost/::.archivelibs:/:detaillibEspresso.so::: 
shared_ptr_helper:undefined: shared_ptr_helperreference() 'to
 ..`/boostcore:/:.libsarchive/:libEspresso.so:: detailundefined :reference: 
shared_ptr_helperto :`:boost::shared_ptr_helperarchive(::)detail'::
shared_ptr_helper.:.:/~coreshared_ptr_helper/().'libs
/../libEspresso.socore:/ .libsundefined/ libEspresso.so:reference  undefined 
toreference  `to 
boost`:boost:::archivempi::::exceptiondetail:::exception:(charshared_ptr_helper 
const:*:,~ intshared_ptr_helper)'(
)..'/
core/...libs//libEspresso.socore: /undefined. libsreference/ tolibEspresso.so 
:` vtable undefinedfor  referenceboost ::tompi: :`exceptionboost':
:.mpi./:core:/.exceptionlibs/:libEspresso.so::exception (undefined 
charreference  toconst *`,typeinfo  for intboost):':
archive.::.detail/::corebasic_iarchive/'
..libs.//corelibEspresso.so/:. libs/undefinedlibEspresso.so : 
referenceundefined  toreference  to` `vtableboost :for: 
mpi:boost::communicator:::mpicommunicator:(:)'exception
'..
/core./../libs/corelibEspresso.so:/ .undefinedlibs /reference libEspresso.soto: 
` boost:undefined: mpi:reference: exceptionto:: ~`exception(typeinfo)' 
.for. /coreboost/:.:libs/archivelibEspresso.so::: undefineddetail :reference 
:to basic_iarchive`'boost
::.mpi.::/exceptioncore::/~.exceptionlibs(/)'
libEspresso.so.:./ coreundefined/ .libsreference/ libEspresso.so:to  undefined 
`referenceboost :to: 
`mpiboost::::archivecommunicator::::detail:communicator:(basic_oarchive:):basic_oarchive'(
unsigned .int.)/'
core..//.corelibs//.libslibEspresso.so/:libEspresso.so : undefinedundefined  
referencereference  toto  
``boost:boost::archive:::mpidetail::::exceptionbasic_oarchive::::~end_preamble(exception)('
).'./
core./../libscore//libEspresso.so:. libsundefined/ referencelibEspresso.so :to  
`undefinedvoid  referenceboost: :tompi: 
:`communicator:boost::send<:boost:mpi::mpi:::exceptionpacked_oarchive:>(:int~, 
exceptionint(, )boost':
:mpi:.:.packed_oarchive /constcore&/) .constlibs'/
.libEspresso.so.:/ core/undefined. libsreference/ libEspresso.so:to  undefined` 
referenceboost :to :`archiveboost::::mpidetail::::status 
basic_oarchiveboost::::mpibasic_oarchive:(:unsignedcommunicator 
::intrecv)<'boost:
:.mpi.::/packed_iarchive>core(/int.,libs /int,libEspresso.so :boost: 
:undefinedmpi ::referencepacked_iarchive &)to  const'`
boost.:./:corearchive/:.libs:/detail:libEspresso.so:: basic_oarchiveundefined 
:reference: toend_preamble (`)typeinfo' 
for .boost.:/:corempi/::.exceptionlibs'/
.libEspresso.so./:core /undefined. libs/referencelibEspresso.so:  toundefined  
reference` tovoid  
`boostboost::::archive:mpi::detail:::communicatorbasic_iarchive:::~:basic_iarchivesend(<)'boost
:.:./mpicore:/.:libs/packed_oarchivelibEspresso.so:> (undefinedint ,reference  
toint ,` typeinfo boostfor: :boost:mpi::archive::packed_oarchive:detail 
:const:&basic_oarchive')
 ..const/'core/
..libs/.libEspresso.so/:core /undefined. libsreference/ tolibEspresso.so 
:`boost ::undefinedarchive ::referencedetail ::tobasic_oarchive 
:`:~boostbasic_oarchive:():'mpi
::status boost::mpi::communicator::recv<boost::mpi::packed_iarchive>(int, int, 
boost::mpi::packed_iarchive&) const'
../core/.libs/libEspresso.so: undefined reference to `typeinfo for 
boost::mpi::exception'collect2: error: ld returned 1 exit status

../core/.libs/libEspresso.so: undefined reference to 
`boost::archive::detail::basic_iarchive::~basic_iarchive()'
../core/.libs/libEspresso.so: undefined reference to `typeinfo for 
boost::archive::detail::basic_oarchive'
../core/.libs/libEspresso.so: undefined reference to 
`boost::archive::detail::basic_oarchive::~basic_oarchive()'
collect2: error: ld returned 1 exit status
Makefile:884: recipe for target 'Espresso' failed
make[3]: *** [Espresso] Error 1
make[3]: *** Waiting for unfinished jobs....
Makefile:888: recipe for target 'Espresso.install' failed
make[3]: *** [Espresso.install] Error 1
make[3]: Leaving directory 
'<http://espressomd.org/jenkins/job/master-multiconfig-compile/myconfig=lees-edwards/ws/src/tcl'>
Makefile:449: recipe for target 'all-recursive' failed
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory 
'<http://espressomd.org/jenkins/job/master-multiconfig-compile/myconfig=lees-edwards/ws/src'>
Makefile:387: recipe for target 'all' failed
make[1]: *** [all] Error 2
make[1]: Leaving directory 
'<http://espressomd.org/jenkins/job/master-multiconfig-compile/myconfig=lees-edwards/ws/src'>
Makefile:475: recipe for target 'all-recursive' failed
make: *** [all-recursive] Error 1
+ exit 1
Build step 'Execute shell' marked build as failure
[WARNINGS] Skipping publisher since build result is FAILURE



reply via email to

[Prev in Thread] Current Thread [Next in Thread]