espressomd-maintainer
[Top][All Lists]
Advanced

[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]

[Espressomd-maintainer] Build failed in Jenkins: master-nightly-multicon


From: Jenkins Demon
Subject: [Espressomd-maintainer] Build failed in Jenkins: master-nightly-multiconfig » default,nompi #351
Date: Thu, 5 May 2016 04:13:53 +0200 (CEST)

See 
<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=default,parallelism=nompi/351/changes>

Changes:

[Florian Weik] cmake: Remove optional MPI from cmake.

[Florian Weik] Removed fake mpi ifdefs.

[Florian Weik] autotools: Removed fake mpi support.

[Florian Weik] mpiio: Removed MPI ifdefs.

[Florian Weik] travis: Removed tests w/o mpi.

------------------------------------------
[...truncated 514 lines...]
  CXX      angle_cossquare.lo
  CXX      angledist.lo
  CXX      dihedral.lo
  CXX      endangledist.lo
  CXX      fene.lo
  CXX      harmonic_dumbbell.lo
  CXX      harmonic.lo
  CXX      quartic.lo
  CXX      overlap.lo
  CXX      umbrella.lo
  CXX      bonded_coulomb.lo
  CXX      subt_lj.lo
  CXX      object-in-fluid/oif_global_forces.lo
  CXX      object-in-fluid/oif_local_forces.lo
  CXX      object-in-fluid/out_direction.lo
  CXX      hydrogen_bond.lo
  CXX      twist_stack.lo
  CXX      debye_hueckel.lo
  CXX      elc.lo
  CXX      magnetic_non_p3m_methods.lo
  CXX      mdlc_correction.lo
  CXX      maggs.lo
  CXX      mmm1d.lo
  CXX      mmm2d.lo
  CXX      mmm-common.lo
  CXX      p3m.lo
  CXX      p3m-common.lo
  CXX      p3m-dipolar.lo
  CXX      reaction_field.lo
  GEN      config-version.cpp
  NVCC     cuda_init_cuda.lo
  NVCC     cuda_common_cuda.lo
  NVCC     electrokinetics_cuda.lo
  NVCC     fd-electrostatics_cuda.lo
  NVCC     lbgpu_cuda.lo
  NVCC     p3m_gpu_cuda.lo
  NVCC     EspressoSystemInterface_cuda.lo
  NVCC     integrate_sd_cuda.lo
  NVCC     integrate_sd_cuda_kernel.lo
  NVCC     integrate_sd_cuda_debug.lo
  NVCC     integrate_sd_matrix.lo
  NVCC     integrate_sd_cuda_device.lo
  NVCC     actor/Mmm1dgpuForce_cuda.lo
  NVCC     actor/EwaldGPU_cuda.lo
  NVCC     actor/HarmonicWell_cuda.lo
  NVCC     immersed_boundary/ibm_cuda.lo
  NVCC     actor/DipolarDirectSum_cuda.lo
  NVCC     actor/HarmonicOrientationWell_cuda.lo
  NVCC     p3m_gpu_error_cuda.lo
  CXX      utils/statistics/RunningAverage.lo
  CXX      object-in-fluid/affinity.lo
  CXX      object-in-fluid/membrane_collision.lo
  CXX      immersed_boundary/ibm_main.lo
  CXX      immersed_boundary/ibm_triel.lo
  CXX      immersed_boundary/ibm_volume_conservation.lo
  CXX      immersed_boundary/ibm_tribend.lo
  CXX      immersed_boundary/ibm_cuda_interface.lo
  CXX      actor/ActorList.lo
  CXX      actor/HarmonicWell.lo
  CXX      actor/HarmonicOrientationWell.lo
  CXX      actor/Mmm1dgpuForce.lo
  CXX      actor/EwaldGPU.lo
  CXX      actor/DipolarDirectSum.lo
  CXX      config-version.lo
  CXXLD    libEspresso.la
make[5]: Leaving directory 
'<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=default,parallelism=nompi/ws/src/core'>
make[4]: Leaving directory 
'<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=default,parallelism=nompi/ws/src/core'>
make[3]: Leaving directory 
'<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=default,parallelism=nompi/ws/src/core'>
Making all in tcl
make[3]: Entering directory 
'<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=default,parallelism=nompi/ws/src/tcl'>
  CXX      bin_tcl.lo
  CXX      binary_file_tcl.lo
  CXX      h5mdfile_tcl.lo
  CXX      blockfile_tcl.lo
  CXX      rotate_system_tcl.lo
  CXX      readpdb_tcl.lo
  CXX      cells_tcl.lo
  CXX      channels_tcl.lo
  CXX      collision_tcl.lo
  CXX      comfixed_tcl.lo
  CXX      comforce_tcl.lo
  CXX      config_tcl.lo
  CXX      constraint_tcl.lo
  CXX      domain_decomposition_tcl.lo
  CXX      electrokinetics_tcl.lo
  CXX      external_potential_tcl.lo
  CXX      energy_tcl.lo
  CXX      galilei_tcl.lo
  CXX      global_tcl.lo
  CXX      grid_tcl.lo
  CXX      iccp3m_tcl.lo
  CXX      imd_tcl.lo
  CXX      initialize_interpreter.lo
  CXX      integrate_tcl.lo
  CXX      interaction_data_tcl.lo
  CXX      lb-boundaries_tcl.lo
  CXX      lb_tcl.lo
  CXX      lees_edwards_tcl.lo
  CXX      metadynamics_tcl.lo
  CXX      nemd_tcl.lo
  CXX      mol_cut_tcl.lo
  CXX      parser.lo
  CXX      particle_data_tcl.lo
  CXX      polymer_tcl.lo
  CXX      pressure_tcl.lo
  CXX      random_tcl.lo
  CXX      reaction_tcl.lo
  CXX      rattle_tcl.lo
  CXX      statistics_chain_tcl.lo
  CXX      statistics_cluster_tcl.lo
  CXX      statistics_correlation_tcl.lo
  CXX      statistics_fluid_tcl.lo
  CXX      statistics_observable_tcl.lo
  CXX      statistics_wallstuff_tcl.lo
  CXX      statistics_tcl.lo
  CXX      thermostat_tcl.lo
  CXX      topology_tcl.lo
  CXX      tuning_tcl.lo
  CXX      uwerr_tcl.lo
  CXX      virtual_sites_com_tcl.lo
  CXX      ghmc_tcl.lo
  CXX      twist_stack_tcl.lo
  CXX      hydrogen_bond_tcl.lo
  CXX      minimize_energy_tcl.lo
  CXX      integrate_sd_tcl.lo
  CXX      mpiio_tcl.lo
  CXX      bmhtf-nacl_tcl.lo
  CXX      buckingham_tcl.lo
  CXX      cos2_tcl.lo
  CXX      dpd_tcl.lo
  CXX      forcecap_tcl.lo
  CXX      gaussian_tcl.lo
  CXX      gb_tcl.lo
  CXX      hat_tcl.lo
  CXX      hertzian_tcl.lo
  CXX      lj_tcl.lo
  CXX      ljangle_tcl.lo
  CXX      ljcos2_tcl.lo
  CXX      ljcos_tcl.lo
  CXX      ljgen_tcl.lo
  CXX      morse_tcl.lo
  CXX      soft_sphere_tcl.lo
  CXX      steppot_tcl.lo
  CXX      tab_tcl.lo
  CXX      tunable_slip_tcl.lo
  CXX      angle_tcl.lo
  CXX      angle_harmonic_tcl.lo
  CXX      angle_cosine_tcl.lo
  CXX      angle_cossquare_tcl.lo
  CXX      angledist_tcl.lo
  CXX      dihedral_tcl.lo
  CXX      endangledist_tcl.lo
  CXX      fene_tcl.lo
  CXX      harmonic_dumbbell_tcl.lo
  CXX      harmonic_tcl.lo
  CXX      quartic_tcl.lo
  CXX      bonded_coulomb_tcl.lo
  CXX      overlap_tcl.lo
  CXX      subt_lj_tcl.lo
  CXX      umbrella_tcl.lo
  CXX      object-in-fluid/oif_global_forces_tcl.lo
  CXX      object-in-fluid/oif_local_forces_tcl.lo
  CXX      object-in-fluid/out_direction_tcl.lo
  CXX      debye_hueckel_tcl.lo
  CXX      elc_tcl.lo
  CXX      magnetic_non_p3m_methods_tcl.lo
  CXX      maggs_tcl.lo
  CXX      mmm1d_tcl.lo
  CXX      mmm2d_tcl.lo
  CXX      p3m-dipolar_tcl.lo
  CXX      p3m_tcl.lo
  CXX      reaction_field_tcl.lo
  CXX      mdlc_correction_tcl.lo
  CXX      cuda_init_tcl.lo
  CXX      Espresso_install-scriptsdir.o
  CXX      Espresso_install-main.o
  NVCC     cuda_workaround.o
  CXX      Espresso-scriptsdir.o
  CXX      Espresso-main.o
  CXX      object-in-fluid/affinity_tcl.lo
  CXX      object-in-fluid/membrane_collision_tcl.lo
  CXX      immersed_boundary/ibm_triel_tcl.lo
  CXX      immersed_boundary/ibm_volume_conservation_tcl.lo
  CXX      immersed_boundary/ibm_tribend_tcl.lo
  CXX      actor/Mmm1dgpu_tcl.lo
  CXX      actor/Ewaldgpu_tcl.lo
  CXX      actor/DipolarDirectSum_tcl.lo
  CXX      actor/HarmonicWell_tcl.lo
  CXX      actor/HarmonicOrientationWell_tcl.lo
  CXXLD    libEspressoTcl.la
  CXXLD    Espresso.install
  CXXLD    Espresso
../core/.libs/libEspresso.so: undefined reference to 
`boost::mpi::communicator::communicator(ompi_communicator_t* const&, 
boost::mpi::comm_create_kind)'
../core/.libs/libEspresso.so: undefined reference to 
`boost::archive::detail::basic_iarchive::basic_iarchive(unsigned int)'
../core/.libs/libEspresso.so: undefined reference to 
`boost::mpi::communicator::operator ompi_communicator_t*() const'
../core/.libs/libEspresso.so: undefined reference to 
`boost::archive::detail::shared_ptr_helper::shared_ptr_helper()'
../core/.libs/libEspresso.so: undefined reference to 
`boost::archive::detail::shared_ptr_helper::~shared_ptr_helper()'
../core/.libs/libEspresso.so: undefined reference to 
`boost::mpi::exception::exception(char const*, int)'
../core/.libs/libEspresso.so: undefined reference to `vtable for 
boost::mpi::exception'
../core/.libs/libEspresso.so: undefined reference to `typeinfo for 
boost::archive::detail::basic_iarchive'
../core/.libs/libEspresso.so: undefined reference to 
`boost::mpi::communicator::communicator()'
../core/.libs/libEspresso.so: undefined reference to 
`boost::mpi::exception::~exception()'
../core/.libs/libEspresso.so: undefined reference to 
`boost::mpi::.exception::.~exception/(core)/'.
.libs/./libEspresso.socore: /undefined. libsreference/ tolibEspresso.so :` 
boostundefined: :referencempi :to: 
communicator`:boost::communicator:(archive:ompi_communicator_t:*detail 
::constbasic_oarchive&:,: basic_oarchiveboost(:unsigned: 
mpiint:):'comm_create_kind
).'.
/.core.//.corelibs//.libEspresso.solibs:/ libEspresso.soundefined:  
referenceundefined  toreference  to` 
boost`:boost::archive::archive::detail:::detail:basic_oarchive:::basic_iarchiveend_preamble:(:)basic_iarchive'(
unsigned. .int/)'core/
..libs.//libEspresso.socore:/ .undefinedlibs/ libEspresso.soreference:  
toundefined  `referencevoid  toboost: 
:`mpiboost::::communicatormpi::::send<communicatorboost::::operatormpi 
::ompi_communicator_tpacked_oarchive*>(()int , constint,' 
boost.:.:/mpicore:/:.packed_oarchivelibs /constlibEspresso.so&:)  
undefinedconst 'reference
 .to. /`coreboost/:.:libsarchive/:libEspresso.so::detail 
::undefinedshared_ptr_helper :reference: shared_ptr_helperto( )`'boost
:.:.mpi/:core:/status. libsboost/:libEspresso.so::mpi :undefined: 
communicatorreference: :torecv 
<`boost:boost::mpi::archive::packed_iarchive:>detail(:int:,shared_ptr_helper 
:int:,~ shared_ptr_helperboost(:):'mpi
:.:.packed_iarchive/&core)/ .constlibs'/
libEspresso.so.:. /undefinedcore /reference. libsto/ `libEspresso.soboost:: 
:undefinedmpi :reference: exceptionto: :`exception(typeinfochar  forconst 
*boost,: :intmpi):':
exception.'.
/.core.//.corelibs//.libEspresso.solibs:/ libEspresso.soundefined:  
referenceundefined  to reference` vtableto  `for 
boostboost::::archivempi::::detailexception:':
basic_iarchive..:/:core~/basic_iarchive.(libs)'/
libEspresso.so.:. /undefinedcore /reference. libsto/ libEspresso.so`:typeinfo  
undefinedfor  referenceboost :to: archive`:typeinfo: detailfor: 
:boostbasic_iarchive:':
archive.:.:/detailcore:/:.basic_oarchivelibs'/
libEspresso.so.:. /undefined corereference/ .tolibs /`libEspresso.soboost:: 
:undefinedmpi :reference: communicatorto :`:boostcommunicator:(:)archive':
:.detail.:/:corebasic_oarchive/:.:libs~/basic_oarchivelibEspresso.so(:) 
'undefined
 reference to `boost::mpi::exception::~exception()'
../core/.libs/libEspresso.so: undefined reference to 
`boost::mpi::exception::~exception()'
../core/.libs/libEspresso.so: undefined reference to 
`boost::archive::detail::basic_oarchive::basic_oarchive(unsigned int)'
.collect2: error: ld returned 1 exit status
./core/.libs/libEspresso.so: undefined reference to 
`boost::archive::detail::basic_oarchive::end_preamble()'
../core/.libs/libEspresso.so: undefined reference to `void 
boost::mpi::communicator::send<boost::mpi::packed_oarchive>(int, int, 
boost::mpi::packed_oarchive const&) const'
../core/.libs/libEspresso.so: undefined reference to `boost::mpi::status 
boost::mpi::communicator::recv<boost::mpi::packed_iarchive>(int, int, 
boost::mpi::packed_iarchive&) const'
../core/.libs/libEspresso.so: undefined reference to `typeinfo for 
boost::mpi::exception'
../core/.libs/libEspresso.so: undefined reference to 
`boost::archive::detail::basic_iarchive::~basic_iarchive()'
../core/.libs/libEspresso.so: undefined reference to `typeinfo for 
boost::archive::detail::basic_oarchive'
../core/.libs/libEspresso.so: undefined reference to 
`boost::archive::detail::basic_oarchive::~basic_oarchive()'
collect2: error: ld returned 1 exit status
Makefile:883: recipe for target 'Espresso.install' failed
make[3]: *** [Espresso.install] Error 1
make[3]: *** Waiting for unfinished jobs....
Makefile:879: recipe for target 'Espresso' failed
make[3]: *** [Espresso] Error 1
make[3]: Leaving directory 
'<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=default,parallelism=nompi/ws/src/tcl'>
Makefile:446: recipe for target 'all-recursive' failed
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory 
'<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=default,parallelism=nompi/ws/src'>
Makefile:384: recipe for target 'all' failed
make[1]: *** [all] Error 2
make[1]: Leaving directory 
'<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=default,parallelism=nompi/ws/src'>
Makefile:472: recipe for target 'all-recursive' failed
make: *** [all-recursive] Error 1
+ exit 1
Build step 'Execute shell' marked build as failure
[WARNINGS] Skipping publisher since build result is FAILURE



reply via email to

[Prev in Thread] Current Thread [Next in Thread]