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[Espressomd-maintainer] Build failed in Jenkins: master-nightly-multicon
From: |
Jenkins Demon |
Subject: |
[Espressomd-maintainer] Build failed in Jenkins: master-nightly-multiconfig » default,4core #351 |
Date: |
Thu, 5 May 2016 04:13:55 +0200 (CEST) |
See
<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=default,parallelism=4core/351/changes>
Changes:
[Florian Weik] cmake: Remove optional MPI from cmake.
[Florian Weik] Removed fake mpi ifdefs.
[Florian Weik] autotools: Removed fake mpi support.
[Florian Weik] mpiio: Removed MPI ifdefs.
[Florian Weik] travis: Removed tests w/o mpi.
------------------------------------------
[...truncated 514 lines...]
CXX angle_cossquare.lo
CXX angledist.lo
CXX dihedral.lo
CXX endangledist.lo
CXX fene.lo
CXX harmonic_dumbbell.lo
CXX harmonic.lo
CXX quartic.lo
CXX overlap.lo
CXX umbrella.lo
CXX bonded_coulomb.lo
CXX subt_lj.lo
CXX object-in-fluid/oif_global_forces.lo
CXX object-in-fluid/oif_local_forces.lo
CXX object-in-fluid/out_direction.lo
CXX hydrogen_bond.lo
CXX twist_stack.lo
CXX debye_hueckel.lo
CXX elc.lo
CXX magnetic_non_p3m_methods.lo
CXX mdlc_correction.lo
CXX maggs.lo
CXX mmm1d.lo
CXX mmm2d.lo
CXX mmm-common.lo
CXX p3m.lo
CXX p3m-common.lo
CXX p3m-dipolar.lo
CXX reaction_field.lo
GEN config-version.cpp
NVCC cuda_init_cuda.lo
NVCC cuda_common_cuda.lo
NVCC electrokinetics_cuda.lo
NVCC fd-electrostatics_cuda.lo
NVCC lbgpu_cuda.lo
NVCC p3m_gpu_cuda.lo
NVCC EspressoSystemInterface_cuda.lo
NVCC integrate_sd_cuda.lo
NVCC integrate_sd_cuda_kernel.lo
NVCC integrate_sd_cuda_debug.lo
NVCC integrate_sd_matrix.lo
NVCC integrate_sd_cuda_device.lo
NVCC actor/Mmm1dgpuForce_cuda.lo
NVCC actor/EwaldGPU_cuda.lo
NVCC actor/HarmonicWell_cuda.lo
NVCC immersed_boundary/ibm_cuda.lo
NVCC actor/DipolarDirectSum_cuda.lo
NVCC actor/HarmonicOrientationWell_cuda.lo
NVCC p3m_gpu_error_cuda.lo
CXX utils/statistics/RunningAverage.lo
CXX object-in-fluid/affinity.lo
CXX object-in-fluid/membrane_collision.lo
CXX immersed_boundary/ibm_main.lo
CXX immersed_boundary/ibm_triel.lo
CXX immersed_boundary/ibm_volume_conservation.lo
CXX immersed_boundary/ibm_tribend.lo
CXX immersed_boundary/ibm_cuda_interface.lo
CXX actor/ActorList.lo
CXX actor/HarmonicWell.lo
CXX actor/HarmonicOrientationWell.lo
CXX actor/Mmm1dgpuForce.lo
CXX actor/EwaldGPU.lo
CXX actor/DipolarDirectSum.lo
CXX config-version.lo
CXXLD libEspresso.la
make[5]: Leaving directory
'<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=default,parallelism=4core/ws/src/core'>
make[4]: Leaving directory
'<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=default,parallelism=4core/ws/src/core'>
make[3]: Leaving directory
'<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=default,parallelism=4core/ws/src/core'>
Making all in tcl
make[3]: Entering directory
'<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=default,parallelism=4core/ws/src/tcl'>
CXX bin_tcl.lo
CXX blockfile_tcl.lo
CXX binary_file_tcl.lo
CXX h5mdfile_tcl.lo
CXX rotate_system_tcl.lo
CXX readpdb_tcl.lo
CXX cells_tcl.lo
CXX channels_tcl.lo
CXX collision_tcl.lo
CXX comfixed_tcl.lo
CXX comforce_tcl.lo
CXX config_tcl.lo
CXX constraint_tcl.lo
CXX domain_decomposition_tcl.lo
CXX electrokinetics_tcl.lo
CXX external_potential_tcl.lo
CXX energy_tcl.lo
CXX galilei_tcl.lo
CXX global_tcl.lo
CXX grid_tcl.lo
CXX iccp3m_tcl.lo
CXX imd_tcl.lo
CXX initialize_interpreter.lo
CXX integrate_tcl.lo
CXX interaction_data_tcl.lo
CXX lb-boundaries_tcl.lo
CXX lb_tcl.lo
CXX lees_edwards_tcl.lo
CXX metadynamics_tcl.lo
CXX nemd_tcl.lo
CXX mol_cut_tcl.lo
CXX parser.lo
CXX particle_data_tcl.lo
CXX polymer_tcl.lo
CXX pressure_tcl.lo
CXX random_tcl.lo
CXX reaction_tcl.lo
CXX rattle_tcl.lo
CXX statistics_chain_tcl.lo
CXX statistics_cluster_tcl.lo
CXX statistics_correlation_tcl.lo
CXX statistics_fluid_tcl.lo
CXX statistics_observable_tcl.lo
CXX statistics_wallstuff_tcl.lo
CXX statistics_tcl.lo
CXX thermostat_tcl.lo
CXX topology_tcl.lo
CXX tuning_tcl.lo
CXX uwerr_tcl.lo
CXX virtual_sites_com_tcl.lo
CXX ghmc_tcl.lo
CXX twist_stack_tcl.lo
CXX hydrogen_bond_tcl.lo
CXX minimize_energy_tcl.lo
CXX integrate_sd_tcl.lo
CXX mpiio_tcl.lo
CXX bmhtf-nacl_tcl.lo
CXX buckingham_tcl.lo
CXX cos2_tcl.lo
CXX dpd_tcl.lo
CXX forcecap_tcl.lo
CXX gaussian_tcl.lo
CXX gb_tcl.lo
CXX hat_tcl.lo
CXX hertzian_tcl.lo
CXX lj_tcl.lo
CXX ljangle_tcl.lo
CXX ljcos2_tcl.lo
CXX ljcos_tcl.lo
CXX ljgen_tcl.lo
CXX morse_tcl.lo
CXX soft_sphere_tcl.lo
CXX steppot_tcl.lo
CXX tab_tcl.lo
CXX tunable_slip_tcl.lo
CXX angle_tcl.lo
CXX angle_harmonic_tcl.lo
CXX angle_cosine_tcl.lo
CXX angle_cossquare_tcl.lo
CXX angledist_tcl.lo
CXX dihedral_tcl.lo
CXX endangledist_tcl.lo
CXX fene_tcl.lo
CXX harmonic_dumbbell_tcl.lo
CXX harmonic_tcl.lo
CXX quartic_tcl.lo
CXX bonded_coulomb_tcl.lo
CXX overlap_tcl.lo
CXX subt_lj_tcl.lo
CXX umbrella_tcl.lo
CXX object-in-fluid/oif_global_forces_tcl.lo
CXX object-in-fluid/oif_local_forces_tcl.lo
CXX object-in-fluid/out_direction_tcl.lo
CXX debye_hueckel_tcl.lo
CXX elc_tcl.lo
CXX magnetic_non_p3m_methods_tcl.lo
CXX maggs_tcl.lo
CXX mmm1d_tcl.lo
CXX mmm2d_tcl.lo
CXX p3m-dipolar_tcl.lo
CXX p3m_tcl.lo
CXX reaction_field_tcl.lo
CXX mdlc_correction_tcl.lo
CXX cuda_init_tcl.lo
CXX Espresso_install-scriptsdir.o
CXX Espresso_install-main.o
NVCC cuda_workaround.o
CXX Espresso-scriptsdir.o
CXX Espresso-main.o
CXX object-in-fluid/affinity_tcl.lo
CXX object-in-fluid/membrane_collision_tcl.lo
CXX immersed_boundary/ibm_triel_tcl.lo
CXX immersed_boundary/ibm_volume_conservation_tcl.lo
CXX immersed_boundary/ibm_tribend_tcl.lo
CXX actor/Mmm1dgpu_tcl.lo
CXX actor/Ewaldgpu_tcl.lo
CXX actor/DipolarDirectSum_tcl.lo
CXX actor/HarmonicWell_tcl.lo
CXX actor/HarmonicOrientationWell_tcl.lo
CXXLD libEspressoTcl.la
CXXLD Espresso.install
CXXLD Espresso
../core/.libs/libEspresso.so: undefined reference to
`boost::mpi::communicator::communicator(ompi_communicator_t* const&,
boost::mpi::comm_create_kind)'
../core/.libs/libEspresso.so: undefined reference to
`boost:.:archive:.:detail::basic_iarchive::basic_iarchive(unsigned int)'
../core/.libs/libEspresso.so: undefined/ referencecore /to.
`libsboost/::libEspresso.sompi:: :undefined communicator:reference: operatorto
ompi_communicator_t`*boost(:): mpiconst:':
communicator.:.:/communicatorcore(/ompi_communicator_t.*libs
/constlibEspresso.so&:, undefinedboost :reference: mpito
:`:boost:comm_create_kind:)'archive:
:.detail.:/:core/shared_ptr_helper.:libs:/shared_ptr_helperlibEspresso.so:(
)undefined'
reference. .to/ core`/boost.:libs:/archivelibEspresso.so::: detailundefined:
:referencebasic_iarchive :to: basic_iarchive`(boostunsigned:
:intarchive:):'detail
:.:.shared_ptr_helper/:core:/~.shared_ptr_helperlibs(/)libEspresso.so'
:. .undefined/ corereference/ .tolibs/ libEspresso.so`:boost :undefined:
mpireference: :tocommunicator :`:boostoperator:
:ompi_communicator_tmpi*:(:)exception :const:'exception
(.char. /constcore/*,. libsint/)libEspresso.so':
..undefined/ corereference/ .tolibs /`libEspresso.soboost:: :undefinedarchive
::referencedetail :to: shared_ptr_helper:`:vtableshared_ptr_helper (for) 'boost
:.:.mpi/:core:/exception.'libs
/.libEspresso.so.:/ coreundefined/ .referencelibs /tolibEspresso.so :`
boostundefined: :referencearchive :to: detail`:typeinfo: shared_ptr_helperfor
:boost::~:archiveshared_ptr_helper::(detail):':
basic_iarchive.'.
/.core.//.corelibs//.libslibEspresso.so/:libEspresso.so undefined:
referenceundefined toreference `toboost
:`:boostmpi::::mpiexception::::communicatorexception:(:charcommunicator
(const)*',
.int.)/'core
/...libs//core/libEspresso.so.:libs /undefinedlibEspresso.so :reference
undefinedto reference` boostto: :`mpivtable: :for
exception:boost::~:exceptionmpi(:):'exception
'.
../.core//core./libs./libslibEspresso.so/:libEspresso.so :undefined
undefinedreference referenceto to` boost`:typeinfo: mpi:for:
exceptionboost::::~archiveexception:(:)detail:':
basic_iarchive.'.
/.core.//.corelibs//.libEspresso.solibs:/ libEspresso.soundefined:
referenceundefined toreference `toboost
:`:boostarchive::::mpidetail::::communicatorbasic_oarchive::::communicatorbasic_oarchive(()'unsigned
. .int/)core'
/..libs.//corelibEspresso.so/:. libsundefined/ libEspresso.soreference:
toundefined `referenceboost :to
:`mpiboost::::exceptionarchive::::~detailexception:(:)basic_oarchive':
:..end_preamble/(core)/'.
libs./.libEspresso.so/:core /undefined. libsreference/ libEspresso.soto:
`undefinedboost ::referencempi :to: exception`:void: ~boostexception:(:)mpi':
:.communicator.:/:coresend/<.libsboost/:libEspresso.so::mpi :undefined:
packed_oarchivereference> (toint ,` boost:int:,
archiveboost::::detail:mpi::basic_oarchive::packed_oarchive:
basic_oarchiveconst(&unsigned) intconst)''
....//corecore//..libslibs//libEspresso.solibEspresso.so:: undefined
undefinedreference referenceto to` boost`::boostmpi::::statusarchive
:boost::detail::mpi:::basic_oarchivecommunicator::::end_preamblerecv()<'boost
:.:mpi.:/:corepacked_iarchive/>.(libsint/,libEspresso.so: int,undefined
boostreference: :tompi :`:voidpacked_iarchive &boost): :constmpi':
:.communicator.:/:coresend/<.boostlibs:/:libEspresso.sompi:::
packed_oarchiveundefined> (referenceint ,to int`,typeinfo boostfor:
:boostmpi::::mpi:packed_oarchive: exceptionconst'&
). .const/'core
/.../libscore//libEspresso.so.libs:/ libEspresso.soundefined:
referenceundefined toreference `toboost
:`:boostarchive:::mpi::detail:::status
basic_iarchiveboost::::~mpibasic_iarchive:(:)communicator':
:.recv.</boostcore:/:.mpilibs:/:libEspresso.sopacked_iarchive:> (undefinedint
,reference intto, `boost:typeinfo: mpifor: :boostpacked_iarchive::&)archive
:const:'detail
:.:.basic_oarchive/'core
./../libscore//.libEspresso.solibs:/ libEspresso.soundefined:
referenceundefined toreference `totypeinfo `forboost
:boost::archive::mpi::detail::exception:'basic_oarchive
:.:.~/basic_oarchivecore(/).'libs
/libEspresso.so: undefined reference to
`boost::archive::detail::basic_iarchive::~basic_iarchive()'
../core/.libs/libEspresso.so: undefined reference to `typeinfo for
boost::archive::detail::basic_oarchive'
../core/.libs/libEspresso.so: undefined reference to `boost::collect2: error:
ld returned 1 exit status
archive::detail::basic_oarchive::~basic_oarchive()'
collect2: error: ld returned 1 exit status
Makefile:883: recipe for target 'Espresso.install' failed
make[3]: *** [Espresso.install] Error 1
make[3]: *** Waiting for unfinished jobs....
Makefile:879: recipe for target 'Espresso' failed
make[3]: *** [Espresso] Error 1
make[3]: Leaving directory
'<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=default,parallelism=4core/ws/src/tcl'>
Makefile:446: recipe for target 'all-recursive' failed
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory
'<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=default,parallelism=4core/ws/src'>
Makefile:384: recipe for target 'all' failed
make[1]: *** [all] Error 2
make[1]: Leaving directory
'<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=default,parallelism=4core/ws/src'>
Makefile:472: recipe for target 'all-recursive' failed
make: *** [all-recursive] Error 1
+ exit 1
Build step 'Execute shell' marked build as failure
[WARNINGS] Skipping publisher since build result is FAILURE
- [Espressomd-maintainer] Build failed in Jenkins: master-nightly-multiconfig » default,4core #351,
Jenkins Demon <=