espressomd-maintainer
[Top][All Lists]
Advanced

[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]

[Espressomd-maintainer] Build failed in Jenkins: master-nightly-multicon


From: Jenkins Demon
Subject: [Espressomd-maintainer] Build failed in Jenkins: master-nightly-multiconfig » default,4core #351
Date: Thu, 5 May 2016 04:13:55 +0200 (CEST)

See 
<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=default,parallelism=4core/351/changes>

Changes:

[Florian Weik] cmake: Remove optional MPI from cmake.

[Florian Weik] Removed fake mpi ifdefs.

[Florian Weik] autotools: Removed fake mpi support.

[Florian Weik] mpiio: Removed MPI ifdefs.

[Florian Weik] travis: Removed tests w/o mpi.

------------------------------------------
[...truncated 514 lines...]
  CXX      angle_cossquare.lo
  CXX      angledist.lo
  CXX      dihedral.lo
  CXX      endangledist.lo
  CXX      fene.lo
  CXX      harmonic_dumbbell.lo
  CXX      harmonic.lo
  CXX      quartic.lo
  CXX      overlap.lo
  CXX      umbrella.lo
  CXX      bonded_coulomb.lo
  CXX      subt_lj.lo
  CXX      object-in-fluid/oif_global_forces.lo
  CXX      object-in-fluid/oif_local_forces.lo
  CXX      object-in-fluid/out_direction.lo
  CXX      hydrogen_bond.lo
  CXX      twist_stack.lo
  CXX      debye_hueckel.lo
  CXX      elc.lo
  CXX      magnetic_non_p3m_methods.lo
  CXX      mdlc_correction.lo
  CXX      maggs.lo
  CXX      mmm1d.lo
  CXX      mmm2d.lo
  CXX      mmm-common.lo
  CXX      p3m.lo
  CXX      p3m-common.lo
  CXX      p3m-dipolar.lo
  CXX      reaction_field.lo
  GEN      config-version.cpp
  NVCC     cuda_init_cuda.lo
  NVCC     cuda_common_cuda.lo
  NVCC     electrokinetics_cuda.lo
  NVCC     fd-electrostatics_cuda.lo
  NVCC     lbgpu_cuda.lo
  NVCC     p3m_gpu_cuda.lo
  NVCC     EspressoSystemInterface_cuda.lo
  NVCC     integrate_sd_cuda.lo
  NVCC     integrate_sd_cuda_kernel.lo
  NVCC     integrate_sd_cuda_debug.lo
  NVCC     integrate_sd_matrix.lo
  NVCC     integrate_sd_cuda_device.lo
  NVCC     actor/Mmm1dgpuForce_cuda.lo
  NVCC     actor/EwaldGPU_cuda.lo
  NVCC     actor/HarmonicWell_cuda.lo
  NVCC     immersed_boundary/ibm_cuda.lo
  NVCC     actor/DipolarDirectSum_cuda.lo
  NVCC     actor/HarmonicOrientationWell_cuda.lo
  NVCC     p3m_gpu_error_cuda.lo
  CXX      utils/statistics/RunningAverage.lo
  CXX      object-in-fluid/affinity.lo
  CXX      object-in-fluid/membrane_collision.lo
  CXX      immersed_boundary/ibm_main.lo
  CXX      immersed_boundary/ibm_triel.lo
  CXX      immersed_boundary/ibm_volume_conservation.lo
  CXX      immersed_boundary/ibm_tribend.lo
  CXX      immersed_boundary/ibm_cuda_interface.lo
  CXX      actor/ActorList.lo
  CXX      actor/HarmonicWell.lo
  CXX      actor/HarmonicOrientationWell.lo
  CXX      actor/Mmm1dgpuForce.lo
  CXX      actor/EwaldGPU.lo
  CXX      actor/DipolarDirectSum.lo
  CXX      config-version.lo
  CXXLD    libEspresso.la
make[5]: Leaving directory 
'<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=default,parallelism=4core/ws/src/core'>
make[4]: Leaving directory 
'<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=default,parallelism=4core/ws/src/core'>
make[3]: Leaving directory 
'<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=default,parallelism=4core/ws/src/core'>
Making all in tcl
make[3]: Entering directory 
'<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=default,parallelism=4core/ws/src/tcl'>
  CXX      bin_tcl.lo
  CXX      blockfile_tcl.lo
  CXX      binary_file_tcl.lo
  CXX      h5mdfile_tcl.lo
  CXX      rotate_system_tcl.lo
  CXX      readpdb_tcl.lo
  CXX      cells_tcl.lo
  CXX      channels_tcl.lo
  CXX      collision_tcl.lo
  CXX      comfixed_tcl.lo
  CXX      comforce_tcl.lo
  CXX      config_tcl.lo
  CXX      constraint_tcl.lo
  CXX      domain_decomposition_tcl.lo
  CXX      electrokinetics_tcl.lo
  CXX      external_potential_tcl.lo
  CXX      energy_tcl.lo
  CXX      galilei_tcl.lo
  CXX      global_tcl.lo
  CXX      grid_tcl.lo
  CXX      iccp3m_tcl.lo
  CXX      imd_tcl.lo
  CXX      initialize_interpreter.lo
  CXX      integrate_tcl.lo
  CXX      interaction_data_tcl.lo
  CXX      lb-boundaries_tcl.lo
  CXX      lb_tcl.lo
  CXX      lees_edwards_tcl.lo
  CXX      metadynamics_tcl.lo
  CXX      nemd_tcl.lo
  CXX      mol_cut_tcl.lo
  CXX      parser.lo
  CXX      particle_data_tcl.lo
  CXX      polymer_tcl.lo
  CXX      pressure_tcl.lo
  CXX      random_tcl.lo
  CXX      reaction_tcl.lo
  CXX      rattle_tcl.lo
  CXX      statistics_chain_tcl.lo
  CXX      statistics_cluster_tcl.lo
  CXX      statistics_correlation_tcl.lo
  CXX      statistics_fluid_tcl.lo
  CXX      statistics_observable_tcl.lo
  CXX      statistics_wallstuff_tcl.lo
  CXX      statistics_tcl.lo
  CXX      thermostat_tcl.lo
  CXX      topology_tcl.lo
  CXX      tuning_tcl.lo
  CXX      uwerr_tcl.lo
  CXX      virtual_sites_com_tcl.lo
  CXX      ghmc_tcl.lo
  CXX      twist_stack_tcl.lo
  CXX      hydrogen_bond_tcl.lo
  CXX      minimize_energy_tcl.lo
  CXX      integrate_sd_tcl.lo
  CXX      mpiio_tcl.lo
  CXX      bmhtf-nacl_tcl.lo
  CXX      buckingham_tcl.lo
  CXX      cos2_tcl.lo
  CXX      dpd_tcl.lo
  CXX      forcecap_tcl.lo
  CXX      gaussian_tcl.lo
  CXX      gb_tcl.lo
  CXX      hat_tcl.lo
  CXX      hertzian_tcl.lo
  CXX      lj_tcl.lo
  CXX      ljangle_tcl.lo
  CXX      ljcos2_tcl.lo
  CXX      ljcos_tcl.lo
  CXX      ljgen_tcl.lo
  CXX      morse_tcl.lo
  CXX      soft_sphere_tcl.lo
  CXX      steppot_tcl.lo
  CXX      tab_tcl.lo
  CXX      tunable_slip_tcl.lo
  CXX      angle_tcl.lo
  CXX      angle_harmonic_tcl.lo
  CXX      angle_cosine_tcl.lo
  CXX      angle_cossquare_tcl.lo
  CXX      angledist_tcl.lo
  CXX      dihedral_tcl.lo
  CXX      endangledist_tcl.lo
  CXX      fene_tcl.lo
  CXX      harmonic_dumbbell_tcl.lo
  CXX      harmonic_tcl.lo
  CXX      quartic_tcl.lo
  CXX      bonded_coulomb_tcl.lo
  CXX      overlap_tcl.lo
  CXX      subt_lj_tcl.lo
  CXX      umbrella_tcl.lo
  CXX      object-in-fluid/oif_global_forces_tcl.lo
  CXX      object-in-fluid/oif_local_forces_tcl.lo
  CXX      object-in-fluid/out_direction_tcl.lo
  CXX      debye_hueckel_tcl.lo
  CXX      elc_tcl.lo
  CXX      magnetic_non_p3m_methods_tcl.lo
  CXX      maggs_tcl.lo
  CXX      mmm1d_tcl.lo
  CXX      mmm2d_tcl.lo
  CXX      p3m-dipolar_tcl.lo
  CXX      p3m_tcl.lo
  CXX      reaction_field_tcl.lo
  CXX      mdlc_correction_tcl.lo
  CXX      cuda_init_tcl.lo
  CXX      Espresso_install-scriptsdir.o
  CXX      Espresso_install-main.o
  NVCC     cuda_workaround.o
  CXX      Espresso-scriptsdir.o
  CXX      Espresso-main.o
  CXX      object-in-fluid/affinity_tcl.lo
  CXX      object-in-fluid/membrane_collision_tcl.lo
  CXX      immersed_boundary/ibm_triel_tcl.lo
  CXX      immersed_boundary/ibm_volume_conservation_tcl.lo
  CXX      immersed_boundary/ibm_tribend_tcl.lo
  CXX      actor/Mmm1dgpu_tcl.lo
  CXX      actor/Ewaldgpu_tcl.lo
  CXX      actor/DipolarDirectSum_tcl.lo
  CXX      actor/HarmonicWell_tcl.lo
  CXX      actor/HarmonicOrientationWell_tcl.lo
  CXXLD    libEspressoTcl.la
  CXXLD    Espresso.install
  CXXLD    Espresso
../core/.libs/libEspresso.so: undefined reference to 
`boost::mpi::communicator::communicator(ompi_communicator_t* const&, 
boost::mpi::comm_create_kind)'
../core/.libs/libEspresso.so: undefined reference to 
`boost:.:archive:.:detail::basic_iarchive::basic_iarchive(unsigned int)'
../core/.libs/libEspresso.so: undefined/ referencecore /to. 
`libsboost/::libEspresso.sompi:: :undefined communicator:reference: operatorto  
ompi_communicator_t`*boost(:): mpiconst:':
communicator.:.:/communicatorcore(/ompi_communicator_t.*libs 
/constlibEspresso.so&:,  undefinedboost :reference: mpito 
:`:boost:comm_create_kind:)'archive:
:.detail.:/:core/shared_ptr_helper.:libs:/shared_ptr_helperlibEspresso.so:( 
)undefined' 
reference. .to/ core`/boost.:libs:/archivelibEspresso.so::: detailundefined: 
:referencebasic_iarchive :to: basic_iarchive`(boostunsigned: 
:intarchive:):'detail
:.:.shared_ptr_helper/:core:/~.shared_ptr_helperlibs(/)libEspresso.so'
:. .undefined/ corereference/ .tolibs/ libEspresso.so`:boost :undefined: 
mpireference: :tocommunicator :`:boostoperator: 
:ompi_communicator_tmpi*:(:)exception :const:'exception
(.char. /constcore/*,. libsint/)libEspresso.so':
 ..undefined/ corereference/ .tolibs /`libEspresso.soboost:: :undefinedarchive 
::referencedetail :to: shared_ptr_helper:`:vtableshared_ptr_helper (for) 'boost
:.:.mpi/:core:/exception.'libs
/.libEspresso.so.:/ coreundefined/ .referencelibs /tolibEspresso.so :` 
boostundefined: :referencearchive :to: detail`:typeinfo: shared_ptr_helperfor 
:boost::~:archiveshared_ptr_helper::(detail):':
basic_iarchive.'.
/.core.//.corelibs//.libslibEspresso.so/:libEspresso.so undefined:  
referenceundefined  toreference  `toboost 
:`:boostmpi::::mpiexception::::communicatorexception:(:charcommunicator 
(const)*',
 .int.)/'core
/...libs//core/libEspresso.so.:libs /undefinedlibEspresso.so :reference  
undefinedto  reference` boostto: :`mpivtable: :for 
exception:boost::~:exceptionmpi(:):'exception
'.
../.core//core./libs./libslibEspresso.so/:libEspresso.so :undefined  
undefinedreference  referenceto  to` boost`:typeinfo: mpi:for: 
exceptionboost::::~archiveexception:(:)detail:':
basic_iarchive.'.
/.core.//.corelibs//.libEspresso.solibs:/ libEspresso.soundefined:  
referenceundefined  toreference  `toboost 
:`:boostarchive::::mpidetail::::communicatorbasic_oarchive::::communicatorbasic_oarchive(()'unsigned
. .int/)core'
/..libs.//corelibEspresso.so/:. libsundefined/ libEspresso.soreference:  
toundefined  `referenceboost :to 
:`mpiboost::::exceptionarchive::::~detailexception:(:)basic_oarchive':
:..end_preamble/(core)/'.
libs./.libEspresso.so/:core /undefined. libsreference/ libEspresso.soto:  
`undefinedboost ::referencempi :to: exception`:void: ~boostexception:(:)mpi':
:.communicator.:/:coresend/<.libsboost/:libEspresso.so::mpi :undefined: 
packed_oarchivereference> (toint ,` boost:int:, 
archiveboost::::detail:mpi::basic_oarchive::packed_oarchive: 
basic_oarchiveconst(&unsigned)  intconst)''

....//corecore//..libslibs//libEspresso.solibEspresso.so::  undefined 
undefinedreference  referenceto  to` boost`::boostmpi::::statusarchive 
:boost::detail::mpi:::basic_oarchivecommunicator::::end_preamblerecv()<'boost
:.:mpi.:/:corepacked_iarchive/>.(libsint/,libEspresso.so:  int,undefined  
boostreference: :tompi :`:voidpacked_iarchive &boost): :constmpi':
:.communicator.:/:coresend/<.boostlibs:/:libEspresso.sompi::: 
packed_oarchiveundefined> (referenceint ,to  int`,typeinfo  boostfor: 
:boostmpi::::mpi:packed_oarchive: exceptionconst'&
). .const/'core
/.../libscore//libEspresso.so.libs:/ libEspresso.soundefined:  
referenceundefined  toreference  `toboost 
:`:boostarchive:::mpi::detail:::status 
basic_iarchiveboost::::~mpibasic_iarchive:(:)communicator':
:.recv.</boostcore:/:.mpilibs:/:libEspresso.sopacked_iarchive:> (undefinedint 
,reference  intto,  `boost:typeinfo: mpifor: :boostpacked_iarchive::&)archive 
:const:'detail
:.:.basic_oarchive/'core
./../libscore//.libEspresso.solibs:/ libEspresso.soundefined:  
referenceundefined  toreference  `totypeinfo  `forboost 
:boost::archive::mpi::detail::exception:'basic_oarchive
:.:.~/basic_oarchivecore(/).'libs
/libEspresso.so: undefined reference to 
`boost::archive::detail::basic_iarchive::~basic_iarchive()'
../core/.libs/libEspresso.so: undefined reference to `typeinfo for 
boost::archive::detail::basic_oarchive'
../core/.libs/libEspresso.so: undefined reference to `boost::collect2: error: 
ld returned 1 exit status
archive::detail::basic_oarchive::~basic_oarchive()'
collect2: error: ld returned 1 exit status
Makefile:883: recipe for target 'Espresso.install' failed
make[3]: *** [Espresso.install] Error 1
make[3]: *** Waiting for unfinished jobs....
Makefile:879: recipe for target 'Espresso' failed
make[3]: *** [Espresso] Error 1
make[3]: Leaving directory 
'<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=default,parallelism=4core/ws/src/tcl'>
Makefile:446: recipe for target 'all-recursive' failed
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory 
'<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=default,parallelism=4core/ws/src'>
Makefile:384: recipe for target 'all' failed
make[1]: *** [all] Error 2
make[1]: Leaving directory 
'<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=default,parallelism=4core/ws/src'>
Makefile:472: recipe for target 'all-recursive' failed
make: *** [all-recursive] Error 1
+ exit 1
Build step 'Execute shell' marked build as failure
[WARNINGS] Skipping publisher since build result is FAILURE



reply via email to

[Prev in Thread] Current Thread [Next in Thread]