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[Espressomd-maintainer] Build failed in Jenkins: master-nightly-multicon
From: |
Jenkins Demon |
Subject: |
[Espressomd-maintainer] Build failed in Jenkins: master-nightly-multiconfig » default,3core #351 |
Date: |
Thu, 5 May 2016 04:13:51 +0200 (CEST) |
See
<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=default,parallelism=3core/351/changes>
Changes:
[Florian Weik] cmake: Remove optional MPI from cmake.
[Florian Weik] Removed fake mpi ifdefs.
[Florian Weik] autotools: Removed fake mpi support.
[Florian Weik] mpiio: Removed MPI ifdefs.
[Florian Weik] travis: Removed tests w/o mpi.
------------------------------------------
[...truncated 514 lines...]
CXX angle_cossquare.lo
CXX angledist.lo
CXX dihedral.lo
CXX endangledist.lo
CXX fene.lo
CXX harmonic_dumbbell.lo
CXX harmonic.lo
CXX quartic.lo
CXX overlap.lo
CXX umbrella.lo
CXX bonded_coulomb.lo
CXX subt_lj.lo
CXX object-in-fluid/oif_global_forces.lo
CXX object-in-fluid/oif_local_forces.lo
CXX object-in-fluid/out_direction.lo
CXX hydrogen_bond.lo
CXX twist_stack.lo
CXX debye_hueckel.lo
CXX elc.lo
CXX magnetic_non_p3m_methods.lo
CXX mdlc_correction.lo
CXX maggs.lo
CXX mmm1d.lo
CXX mmm2d.lo
CXX mmm-common.lo
CXX p3m.lo
CXX p3m-common.lo
CXX p3m-dipolar.lo
CXX reaction_field.lo
GEN config-version.cpp
NVCC cuda_init_cuda.lo
NVCC cuda_common_cuda.lo
NVCC electrokinetics_cuda.lo
NVCC fd-electrostatics_cuda.lo
NVCC lbgpu_cuda.lo
NVCC p3m_gpu_cuda.lo
NVCC EspressoSystemInterface_cuda.lo
NVCC integrate_sd_cuda.lo
NVCC integrate_sd_cuda_kernel.lo
NVCC integrate_sd_cuda_debug.lo
NVCC integrate_sd_matrix.lo
NVCC integrate_sd_cuda_device.lo
NVCC actor/Mmm1dgpuForce_cuda.lo
NVCC actor/EwaldGPU_cuda.lo
NVCC actor/HarmonicWell_cuda.lo
NVCC immersed_boundary/ibm_cuda.lo
NVCC actor/DipolarDirectSum_cuda.lo
NVCC actor/HarmonicOrientationWell_cuda.lo
NVCC p3m_gpu_error_cuda.lo
CXX utils/statistics/RunningAverage.lo
CXX object-in-fluid/affinity.lo
CXX object-in-fluid/membrane_collision.lo
CXX immersed_boundary/ibm_main.lo
CXX immersed_boundary/ibm_triel.lo
CXX immersed_boundary/ibm_volume_conservation.lo
CXX immersed_boundary/ibm_tribend.lo
CXX immersed_boundary/ibm_cuda_interface.lo
CXX actor/ActorList.lo
CXX actor/HarmonicWell.lo
CXX actor/HarmonicOrientationWell.lo
CXX actor/Mmm1dgpuForce.lo
CXX actor/EwaldGPU.lo
CXX actor/DipolarDirectSum.lo
CXX config-version.lo
CXXLD libEspresso.la
make[5]: Leaving directory
'<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=default,parallelism=3core/ws/src/core'>
make[4]: Leaving directory
'<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=default,parallelism=3core/ws/src/core'>
make[3]: Leaving directory
'<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=default,parallelism=3core/ws/src/core'>
Making all in tcl
make[3]: Entering directory
'<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=default,parallelism=3core/ws/src/tcl'>
CXX bin_tcl.lo
CXX binary_file_tcl.lo
CXX blockfile_tcl.lo
CXX h5mdfile_tcl.lo
CXX rotate_system_tcl.lo
CXX readpdb_tcl.lo
CXX cells_tcl.lo
CXX channels_tcl.lo
CXX collision_tcl.lo
CXX comfixed_tcl.lo
CXX comforce_tcl.lo
CXX config_tcl.lo
CXX constraint_tcl.lo
CXX domain_decomposition_tcl.lo
CXX electrokinetics_tcl.lo
CXX external_potential_tcl.lo
CXX energy_tcl.lo
CXX galilei_tcl.lo
CXX global_tcl.lo
CXX grid_tcl.lo
CXX iccp3m_tcl.lo
CXX imd_tcl.lo
CXX initialize_interpreter.lo
CXX integrate_tcl.lo
CXX interaction_data_tcl.lo
CXX lb-boundaries_tcl.lo
CXX lb_tcl.lo
CXX lees_edwards_tcl.lo
CXX metadynamics_tcl.lo
CXX nemd_tcl.lo
CXX mol_cut_tcl.lo
CXX parser.lo
CXX particle_data_tcl.lo
CXX polymer_tcl.lo
CXX pressure_tcl.lo
CXX random_tcl.lo
CXX reaction_tcl.lo
CXX rattle_tcl.lo
CXX statistics_chain_tcl.lo
CXX statistics_cluster_tcl.lo
CXX statistics_correlation_tcl.lo
CXX statistics_fluid_tcl.lo
CXX statistics_observable_tcl.lo
CXX statistics_wallstuff_tcl.lo
CXX statistics_tcl.lo
CXX thermostat_tcl.lo
CXX topology_tcl.lo
CXX tuning_tcl.lo
CXX uwerr_tcl.lo
CXX virtual_sites_com_tcl.lo
CXX ghmc_tcl.lo
CXX twist_stack_tcl.lo
CXX hydrogen_bond_tcl.lo
CXX minimize_energy_tcl.lo
CXX integrate_sd_tcl.lo
CXX mpiio_tcl.lo
CXX bmhtf-nacl_tcl.lo
CXX buckingham_tcl.lo
CXX cos2_tcl.lo
CXX dpd_tcl.lo
CXX forcecap_tcl.lo
CXX gaussian_tcl.lo
CXX gb_tcl.lo
CXX hat_tcl.lo
CXX hertzian_tcl.lo
CXX lj_tcl.lo
CXX ljangle_tcl.lo
CXX ljcos2_tcl.lo
CXX ljcos_tcl.lo
CXX ljgen_tcl.lo
CXX morse_tcl.lo
CXX soft_sphere_tcl.lo
CXX steppot_tcl.lo
CXX tab_tcl.lo
CXX tunable_slip_tcl.lo
CXX angle_tcl.lo
CXX angle_harmonic_tcl.lo
CXX angle_cosine_tcl.lo
CXX angle_cossquare_tcl.lo
CXX angledist_tcl.lo
CXX dihedral_tcl.lo
CXX endangledist_tcl.lo
CXX fene_tcl.lo
CXX harmonic_dumbbell_tcl.lo
CXX harmonic_tcl.lo
CXX quartic_tcl.lo
CXX bonded_coulomb_tcl.lo
CXX overlap_tcl.lo
CXX subt_lj_tcl.lo
CXX umbrella_tcl.lo
CXX object-in-fluid/oif_global_forces_tcl.lo
CXX object-in-fluid/oif_local_forces_tcl.lo
CXX object-in-fluid/out_direction_tcl.lo
CXX debye_hueckel_tcl.lo
CXX elc_tcl.lo
CXX magnetic_non_p3m_methods_tcl.lo
CXX maggs_tcl.lo
CXX mmm1d_tcl.lo
CXX mmm2d_tcl.lo
CXX p3m-dipolar_tcl.lo
CXX p3m_tcl.lo
CXX reaction_field_tcl.lo
CXX mdlc_correction_tcl.lo
CXX cuda_init_tcl.lo
CXX Espresso_install-scriptsdir.o
CXX Espresso_install-main.o
NVCC cuda_workaround.o
CXX Espresso-scriptsdir.o
CXX Espresso-main.o
CXX object-in-fluid/affinity_tcl.lo
CXX object-in-fluid/membrane_collision_tcl.lo
CXX immersed_boundary/ibm_triel_tcl.lo
CXX immersed_boundary/ibm_volume_conservation_tcl.lo
CXX immersed_boundary/ibm_tribend_tcl.lo
CXX actor/Mmm1dgpu_tcl.lo
CXX actor/Ewaldgpu_tcl.lo
CXX actor/DipolarDirectSum_tcl.lo
CXX actor/HarmonicWell_tcl.lo
CXX actor/HarmonicOrientationWell_tcl.lo
CXXLD libEspressoTcl.la
CXXLD Espresso
CXXLD Espresso.install
.../core.//.corelibs//.libEspresso.solibs:/ libEspresso.soundefined:
referenceundefined toreference `toboost
:`:boostmpi::::mpicommunicator::::communicatorcommunicator:(:ompi_communicator_tcommunicator*(
ompi_communicator_tconst*& ,const &boost,:
:boostmpi::::mpicomm_create_kind:):'comm_create_kind
).'.
/.core.//.corelibs//.libEspresso.solibs:/ libEspresso.soundefined:
referenceundefined toreference `toboost
:`:boostarchive::::archivedetail::::detail:basic_iarchive:::basic_iarchivebasic_iarchive:(:unsignedbasic_iarchive
(intunsigned) 'int
).'.
/.core.//.corelibs//.libslibEspresso.so/:libEspresso.so :undefined
undefinedreference referenceto to`
boost`:boost::mpi::mpi::communicator:::communicatoroperator:
:ompi_communicator_t*operator( )ompi_communicator_t *const()'
const.'.
./.core//core/..libslibs//libEspresso.solibEspresso.so:: undefinedundefined
referencereference toto
``boostboost::::archivearchive::::detaildetail::::shared_ptr_helpershared_ptr_helper::::shared_ptr_helpershared_ptr_helper(()')
'.
../.core//core./libs/libEspresso.so: undefined reference to
`boost::archive::detail::shared_ptr_helper::~.shared_ptr_helperlibs(/)'libEspresso.so
:. .undefined/ corereference/ .tolibs /`libEspresso.soboost:: :undefinedarchive
:reference: detailto:
:`shared_ptr_helperboost::::~mpi:shared_ptr_helper:()exception':
:.exception.(/charcore /const.*libs,/ libEspresso.soint:) 'undefined
.reference. /tocore /`.boostlibs:/:libEspresso.sompi:: :undefinedexception
:reference: exceptionto( char` vtableconst *for, intboost):':
mpi.:.:/exceptioncore'/
..libs.//libEspresso.socore:/ .undefinedlibs /referencelibEspresso.so :to
undefined` referencevtable tofor `boosttypeinfo: :formpi
:boost:::exceptionarchive':
:.detail.:/:corebasic_iarchive/'.
libs./.libEspresso.so/:core /undefined. libsreference/ libEspresso.soto:
undefined` typeinforeference forto
boost`:boost::archive::mpi::detail::communicator::basic_iarchive:'communicator
(.).'/
core./../libscore//.libslibEspresso.so/:libEspresso.so :undefined
undefinedreference referenceto to`
boost`::boostmpi::::mpi:communicator::exception::communicator:(~)exception'(
).'.
/.core.//.corelibs//.libEspresso.solibs:/ libEspresso.soundefined:
referenceundefined toreference `toboost
:`:boostmpi::::mpiexception::::exception~:exception:(~)exception'(
).'.
/..core//.core/libs./libslibEspresso.so/:libEspresso.so :undefined
undefinedreference referenceto to`
boost`:boost::mpi::archive::exception::detail::~:exceptionbasic_oarchive(:):'basic_oarchive
(.unsigned. /intcore)/'.
libs./.libEspresso.so/:core /undefined. libsreference/ libEspresso.soto:
`undefined boostreference: :toarchive
:`:boostdetail::::archivebasic_oarchive::::detailbasic_oarchive:(:unsigned
basic_oarchiveint:):'end_preamble
(.).'/
.core.//.corelibs//.libEspresso.solibs:/ libEspresso.soundefined:
referenceundefined toreference `toboost :`:voidarchive
:boost::detail::mpi::basic_oarchive::communicator::end_preamble:()send'<
boost.:.:/mpicore:/:.packed_oarchivelibs>/(libEspresso.soint:, undefinedint ,
referenceboost :to: mpi`:void: packed_oarchiveboost :const:&mpi):
:const'communicator
:.:./sendcore</boost.:libs:/mpilibEspresso.so::: packed_oarchiveundefined>
(referenceint ,to int`,boost :boost::mpi::mpi::status: packed_oarchiveboost
:const:&mpi): :constcommunicator':
:.recv.</boostcore:/:.mpilibs:/:libEspresso.sopacked_iarchive:> (undefinedint ,
referenceint ,to boost`:boost::mpi::mpi::packed_iarchive:&status) constboost':
:.mpi.::/communicatorcore:/:.recvlibs</boostlibEspresso.so::: mpiundefined:
:reference packed_iarchiveto> (`inttypeinfo, forint boost,:
:boostmpi::::mpi:exception:'packed_iarchive
&.). /constcore'/
..libs.//libEspresso.socore:/ .undefinedlibs /referencelibEspresso.so :to
undefined` boostreference: :toarchive :`:typeinfodetail :for:
basic_iarchiveboost::::~mpibasic_iarchive:(:)exception''
....//corecore//..libslibs//libEspresso.solibEspresso.so:: undefinedundefined
referencereference toto ``boosttypeinfo :for:
archiveboost:::detail::archive::basic_iarchive::detail::~:basic_iarchivebasic_oarchive(')
'.
../.core//core./libs/.libEspresso.solibs:/ libEspresso.soundefined:
referenceundefined toreference `toboost :`:typeinfoarchive: :fordetail
:boost:::basic_oarchivearchive::::~detailbasic_oarchive:(:)basic_oarchive''
../core/.libs/libEspresso.so: undefined reference to
`boost::archive::detail::basic_oarchive::~basic_oarchive()'
collect2: error: ld returned 1 exit status
collect2: error: ld returned 1 exit status
Makefile:883: recipe for target 'Espresso.install' failed
make[3]: *** [Espresso.install] Error 1
make[3]: *** Waiting for unfinished jobs....
Makefile:879: recipe for target 'Espresso' failed
make[3]: *** [Espresso] Error 1
make[3]: Leaving directory
'<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=default,parallelism=3core/ws/src/tcl'>
Makefile:446: recipe for target 'all-recursive' failed
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory
'<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=default,parallelism=3core/ws/src'>
Makefile:384: recipe for target 'all' failed
make[1]: *** [all] Error 2
make[1]: Leaving directory
'<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=default,parallelism=3core/ws/src'>
Makefile:472: recipe for target 'all-recursive' failed
make: *** [all-recursive] Error 1
+ exit 1
Build step 'Execute shell' marked build as failure
[WARNINGS] Skipping publisher since build result is FAILURE
- [Espressomd-maintainer] Build failed in Jenkins: master-nightly-multiconfig » default,3core #351,
Jenkins Demon <=